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Report for CCDS5625.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5625.1 Public Homo sapiens 7 GATAD1 24 110 108 CCDS HistoryNCBI Gene:57798Re-query CCDS DB by CCDS ID:5625.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5625.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000287957.5 ENSP00000287957.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000287957.5Link to Ensembl Protein Viewer:ENSP00000287957.3Re-query CCDS DB by Nucleotide ID:ENST00000287957Re-query CCDS DB by Protein ID:ENSP00000287957
Original member Current member NCBI NM_021167.5 NP_066990.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021167.5Link to Protein Sequence:NP_066990.3Re-query CCDS DB by Nucleotide ID:NM_021167Re-query CCDS DB by Protein ID:NP_066990Link to BLAST:NP_066990.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066990.3 269 Q8WUU5 269 100% 0 0

Chromosomal Locations for CCDS 5625.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 92447730 92447978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92448752 92448877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92450701 92450760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92454502 92454685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92456372 92456562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGCCGCTGGGCCTGAAGCCCACCTGCAGCGTATGCAAGACCACGTCGTCCTCCATGTGGAAGAAGGGAG
CGCAGGGGGAGATCCTCTGCCATCATTGCACTGGCCGGGGCGGCGCGGGCAGCGGGGGCGCAGGCTCGGG
GGCGGCTGGAGGGACTGGGGGCAGCGGCGGCGGCGGCTTCGGCGCGGCGACCTTCGCCAGCACCTCCGCC
ACCCCTCCGCAGAGCAACGGGGGCGGGGGCGGCAAGCAGAGTAAGCAGGAAATTCACAGGAGGTCTGCTC
GGCTCAGAAACACTAAATACAAATCTGCTCCGGCTGCTGAAAAGAAAGTCTCCACCAAAGGAAAAGGGAG
AAGACATATATTTAAATTGAAAAATCCCATCAAAGCTCCTGAGTCAGTTTCCACTATAATCACTGCAGAA
TCAATCTTCTACAAGGGAGTATATTACCAAATTGGTGATGTTGTTTCTGTGATTGATGAACAAGATGGAA
AGCCCTACTATGCTCAAATCAGAGGTTTTATCCAGGACCAGTATTGCGAGAAGAGTGCAGCACTGACGTG
GCTCATTCCTACCCTCTCTAGCCCCAGAGACCAATTTGATCCCGCCTCCTATATCATAGGGCCAGAGGAA
GATCTTCCAAGGAAGATGGAATACTTGGAATTTGTTTGTCATGCACCTTCTGAGTATTTCAAGTCACGGT
CATCACCATTTCCCACAGTTCCCACCAGACCAGAGAAGGGCTACATATGGACTCATGTTGGGCCTACTCC
TGCAATAACAATTAAGGAATCAGTTGCCAACCATTTGTAG

Translation (269 aa):
MPLGLKPTCSVCKTTSSSMWKKGAQGEILCHHCTGRGGAGSGGAGSGAAGGTGGSGGGGFGAATFASTSA
TPPQSNGGGGGKQSKQEIHRRSARLRNTKYKSAPAAEKKVSTKGKGRRHIFKLKNPIKAPESVSTIITAE
SIFYKGVYYQIGDVVSVIDEQDGKPYYAQIRGFIQDQYCEKSAALTWLIPTLSSPRDQFDPASYIIGPEE
DLPRKMEYLEFVCHAPSEYFKSRSSPFPTVPTRPEKGYIWTHVGPTPAITIKESVANHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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