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Report for CCDS36293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36293.1 Public Mus musculus 11 Arhgap23 23 108 98 CCDS HistoryNCBI Gene:58996Re-query CCDS DB by CCDS ID:36293.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36293.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107601.7 ENSMUSP00000103227.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107601.7Link to Ensembl Protein Viewer:ENSMUSP00000103227.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107601Re-query CCDS DB by Protein ID:ENSMUSP00000103227
Original member NCBI NM_021493.2 NP_067468.2 Updated not alive Link to Nucleotide Sequence:NM_021493.2Link to Protein Sequence:NP_067468.2Re-query CCDS DB by Nucleotide ID:NM_021493Re-query CCDS DB by Protein ID:NP_067468
Current member NCBI NM_021493.3 NP_067468.2 Accepted alive Link to Nucleotide Sequence:NM_021493.3Link to Protein Sequence:NP_067468.2Re-query CCDS DB by Nucleotide ID:NM_021493Re-query CCDS DB by Protein ID:NP_067468Link to BLAST:NP_067468.2

Chromosomal Locations for CCDS 36293.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97451527 97452544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97453865 97454020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97454214 97454325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97454446 97454503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97456455 97456598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97463384 97463701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97464795 97464856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97465059 97465189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97466010 97466131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97466432 97466587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97470368 97470446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97475015 97475088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97475324 97475413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97476048 97476173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97490072 97490113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97491134 97491230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97493051 97493082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97500109 97501125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3834 nt):
ATGGTGCCTGAGCCCATCTCAGCACTACCCCCAGATCCCCGGAGTCCTGCTGCCTGGAGTGACCCAGGGT
CCCGTGTCCCATCTGCCACCCGTGCCCACCTGGACAACTCTTCCTTGGGGATGAGCCAGCCCCGCCCAAG
CCCTGGTGCCTTTCCCCACCTCCCTTCAGAGTCCCGGACACCCCGTGCCTTCCCAGAGCCTGGCAGCCGG
GTGCTTCCCAGCAGACTGGAGTGCCAGCAGGCTCTGTCACACTGGCTGTCCAATCAGATACCCCGCAGAG
CGGGGGAGAGACGGTGCCCAGCCATGCCACCCCGGGCCCGCAGTGCCTCCCAGGACCGGTTGGAGGATGT
GACTACCCACCACCCATGGCCCTGCTCCACCTCCCAGGATGCCTTGAGCCAGCTGGGCCAGGAGGGTTGG
CACCGAGCTCGCTCAGACGATTACCTGAGCCGGGCTACCCGCTCTGCTGAAGCACTGGGTCCAGGAGCAC
TGGTGTCCCCTCGTCTTGAACGCTGTGGTTGGGCTTCCCAGCGCCCATCTGCCCGCACCTCTGCTTGCCC
TTCTCGGGACTTGACCCAGGCCCCTCCCCCATCTGGCCTGCAGGGCCTGGATGACATCGGGTACATTGGA
TATCGGAGCTATAGCCCATCATTCCAGCGCCGGACTGGTCTCTTGCACGCCCTCTCCTTCCGGGACTCAC
CCTTTGGGGGACTTCCCACCTTCAGCTTGGCCCAGTCTCCTGCATCATTCCCACCAGAGGCCTCCGAACC
ACCTAGGGTCGTCCGGCCAGATCCTAGCACCCGAGCCCTAGAGCCTCCCGCAGAGGATCATCGTGATGAG
GTGGTCCTGAGGCAGAAGCCTCCAACGGGTCGCAAGGTCCAGCTGACCCCAGCAAGGCAGATGAACCTTG
GATTTGGTGATGAGTCCCCAGAACCCGAGGCCAGAGGGGAACGCCTGGGGAGGAAGGTAGCCCCTCTGGC
CACTACGGAAGACTCGCTGGCTTCTATTCCCTTTATTGACGAGCCCACCAGCCCCAGCATTGACCTTCAG
GCCAAGCATGTCCCTGCCTCCGCAGTGGTCTCCAGTGCCATGAACTCAGCCCCTGTCCTGGGAACTAGCC
CATCCTCGCCAACCTTCACTTTTGCCCTCAGCCGCCATTACTCCCAGGACTGCAGCAGCATCAAGGCAGG
CCGCCGTTCCTCCTACCTGCTGGCCATCACCACGGAGCGCTCCAAGTCCTGTGACGATGGACTGAACACC
TTCCGGGATGAGGGCCGAGTGCTCCGGCGCCTTCCCAGCCGGGTGCCCAGCCTACGAGTGCTGCGGAGCT
TCTTCACGGACGGGTCTCTAGATAGCTGGGGCACCTCTGAAGATGCTGATGCCCCCTCTAAACGACACTC
AACCTCTGACCTCTCAGATGCAACCTTCAGTGATATCAGGAGAGAAGGCTGGTTGTATTATAAACAGATC
CTCACCAAGAAGGGGAAGAAAGCGGGCGGCGGCCTGCGCCAGTGGAAGCGCGTCTATGCCGTCCTGCGGG
CGCGCTCGCTCTCGTTGAGCAAGGAGCGGCGGGAGCCCGGGCCGGCGGCTGCGGGGGCTGCGGCGGCCGG
CGCAGGTGAGGACGAGGCGGCGCCCGTCTGCATCGGCTCCTGCCTGGTGGACATCTCCTACAGCGAGACC
AAAAGGAGGCACGTGTTCCGGCTGACCACCGCTGACTTCTGTGAATATCTCTTTCAGGCTGAGGATCGGG
ATGACATGCTGGGCTGGATCAGAGCGATCCGGGAGAACAGCAGGGCCGAGGGCGAGGACCCCGGCTGTGC
CAACCAAGCTCTGATCAGCAAGAAGCTTAATGACTATCGCAAAGTGAGCCATAGCTCTGGGCCCAAAGCC
GATTCCTCCCCTAAAGGCTCTCGGGGCCTGGGAGGCCTCAAGTCTGAATTCCTCAAGCAGACTGCAGTCC
GCGGCCTCAGAACTCAGGAGCAGCCCCCAGGAAGCAAGGAAGACAGTGTTGCAGCTCCCAAAACCCCCTG
GGGCATCAATATTATCAAGAAGAACAAGAAGGCCGCCCCGAGGGCATTTGGAATCCGGTTGGAGGAGTGC
CAGCCTGCCACCGAGAACCAGCGTGTCCCCCTGATCGTTGCTGCCTGCTGCCGTATTGTGGAGGCCCGGG
GGCTGGAATCAACTGGCATTTACCGGGTACCTGGCAACAACGCAGTGGTGTCTAGCCTGCAGGAGCAGCT
CAACCGTGGGCCAAGTGACATCAACCTGCAGGATGAGCGCTGGCAGGACCTCAATGTCATCAGCAGCCTG
CTCAAGGCTTTCTTCCGCAAGCTGCCGGAGCCTCTTTTCACTGATGACAAATACAATGACTTCATCGAGG
CCAATCGGATAGAAGATTCCAGGGAGAGGATGAAGACGCTGCGGAAGCTGATCCGGGATCTCCCAGGACA
CTACTATGAAACACTTAAATTCCTTGTGGGCCATCTCAAGACCATTGCTGACCACTCAGAGAAGAACAAG
ATGGAACCCCGGAACCTGGCTCTGGTCTTCGGGCCAACATTGGTAAGGACATCTGAAGACAACATGACAG
ACATGGTGACCCACATGCCGGACCGCTACAAGATCGTGGAGACGTTGATCCAGCATTCTGACTGGTTCTT
CAGTGATGATGAGGACAAAGGAGAGAGAACCCCTGTTGATGACAAGGAGCCACAGTCGGTGCCCAACATC
GAGTACCTCCTGCCCAACATTGGCAGGACAGTGCCCCCCAGTGATCCAGGCTCAGATTCCACCACCTGTA
GCTCAGCCAAGTCCAAGGGTTCCTGGGTCCCCAAGAAAGAGCCTTACGCCCGGGAGATGCTGGCGATCTC
CTTCATCTCTGCGGTCAACCGCAAACGGAAGAAGCGGCGGGAGGCGCGGGGCCTGGGCAGCAGCACCGAC
GATGACTCCGAGCAGGAGGCGCACAAGGCTGCGGTGGGGACGCAGGAGCCACCCGAGGGGCAGCTGCCGG
GCCCCGCAGCCGAGGAGGCCCCTGGTCGCCTCAGCCCCCCTACGGCACCCGACGAACGGCCTGCGGCGGA
CACGCGCTCCATCGTCTCGGGCTACTCCACCCTGTCCACCATGGACCGTAGCGTGTGCTCGGGCACCGGC
GGGCGGCGCGCGGGCGCGGGCGACGAGGCGGACGACGAACGCAGCGAGCTGAGCCACGTGGAGACGGACA
CGGAGGGGGGCGCAGGCCCCGGGGGGCGCCTGTCGCGCCGGCCATCCTTCAGCTCACACCATCTCATGCC
ATGCGACACTCTGGCACGCCGTCGCCTGTCTCGCAGCCGCGCGGAGGCCGAGGGTCCGGGCGCGGGTACG
GCCCGGGCGTGTCCCCGCGGTCCGGAGCCACCGGGCTCGGCATCGTCCAGCAGCCAGGAGTCGCTGCGGC
CCCCGGCGGCCGCCCCGGCACTCGGCTCACGACCTTCGCGCGTGGAAGCCCTGCGGCTACGTCTCCGTGG
CACCGCCGACGACATGCTGGCCGTGCGGCTGCGGCGCCCACTGTCGCCCGAGACGCGGCGGCGCCGGAGT
AGCTGGCGCCGCCACACAGTGGTGGTGCAGAGCCCGCTGACCGACCTCAACTTCAACGAGTGGAAGGAGC
TGGGTGGAGGGGGCCCTCAGGAGTCCGTGGGCGTGCGACCGCACAGCGACAATAAGGACTCTGGCCTCAG
CAGCCTGGAGTCCACCAAGGCACGGGCCTCATCCGCCGCATCACTGCCATCTGGGGACCTAGGGGCCCTG
CAGGGTCTGCCCCAGCGCCGCTCAGCTGCCGCCCGCCTCCACCAGTGTCTGTGA

Translation (1277 aa):
MVPEPISALPPDPRSPAAWSDPGSRVPSATRAHLDNSSLGMSQPRPSPGAFPHLPSESRTPRAFPEPGSR
VLPSRLECQQALSHWLSNQIPRRAGERRCPAMPPRARSASQDRLEDVTTHHPWPCSTSQDALSQLGQEGW
HRARSDDYLSRATRSAEALGPGALVSPRLERCGWASQRPSARTSACPSRDLTQAPPPSGLQGLDDIGYIG
YRSYSPSFQRRTGLLHALSFRDSPFGGLPTFSLAQSPASFPPEASEPPRVVRPDPSTRALEPPAEDHRDE
VVLRQKPPTGRKVQLTPARQMNLGFGDESPEPEARGERLGRKVAPLATTEDSLASIPFIDEPTSPSIDLQ
AKHVPASAVVSSAMNSAPVLGTSPSSPTFTFALSRHYSQDCSSIKAGRRSSYLLAITTERSKSCDDGLNT
FRDEGRVLRRLPSRVPSLRVLRSFFTDGSLDSWGTSEDADAPSKRHSTSDLSDATFSDIRREGWLYYKQI
LTKKGKKAGGGLRQWKRVYAVLRARSLSLSKERREPGPAAAGAAAAGAGEDEAAPVCIGSCLVDISYSET
KRRHVFRLTTADFCEYLFQAEDRDDMLGWIRAIRENSRAEGEDPGCANQALISKKLNDYRKVSHSSGPKA
DSSPKGSRGLGGLKSEFLKQTAVRGLRTQEQPPGSKEDSVAAPKTPWGINIIKKNKKAAPRAFGIRLEEC
QPATENQRVPLIVAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLNRGPSDINLQDERWQDLNVISSL
LKAFFRKLPEPLFTDDKYNDFIEANRIEDSRERMKTLRKLIRDLPGHYYETLKFLVGHLKTIADHSEKNK
MEPRNLALVFGPTLVRTSEDNMTDMVTHMPDRYKIVETLIQHSDWFFSDDEDKGERTPVDDKEPQSVPNI
EYLLPNIGRTVPPSDPGSDSTTCSSAKSKGSWVPKKEPYAREMLAISFISAVNRKRKKRREARGLGSSTD
DDSEQEAHKAAVGTQEPPEGQLPGPAAEEAPGRLSPPTAPDERPAADTRSIVSGYSTLSTMDRSVCSGTG
GRRAGAGDEADDERSELSHVETDTEGGAGPGGRLSRRPSFSSHHLMPCDTLARRRLSRSRAEAEGPGAGT
ARACPRGPEPPGSASSSSQESLRPPAAAPALGSRPSRVEALRLRLRGTADDMLAVRLRRPLSPETRRRRS
SWRRHTVVVQSPLTDLNFNEWKELGGGGPQESVGVRPHSDNKDSGLSSLESTKARASSAASLPSGDLGAL
QGLPQRRSAAARLHQCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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