NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS71161.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71161.1 Public Mus musculus 2 Snph 23 108 98 CCDS HistoryNCBI Gene:241727Re-query CCDS DB by CCDS ID:71161.1Re-query CCDS DB by GeneID:241727See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71161.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109877.9 ENSMUSP00000105503.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109877.9Link to Ensembl Protein Viewer:ENSMUSP00000105503.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109877Re-query CCDS DB by Protein ID:ENSMUSP00000105503
Original member Current member NCBI NM_001291077.1 NP_001278006.1 Accepted alive Link to Nucleotide Sequence:NM_001291077.1Link to Protein Sequence:NP_001278006.1Re-query CCDS DB by Nucleotide ID:NM_001291077Re-query CCDS DB by Protein ID:NP_001278006Link to BLAST:NP_001278006.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278006.1 459 Q80U23-3 459 100% 0 0

Chromosomal Locations for CCDS 71161.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 151593420 151594599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151597109 151597258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151600978 151601027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGCCATGTCCCTGCAGGGAAGTAGACGAGCCTCTGCCGGATCTCGCAGGCGCTCCATGAAGTACACAC
TATGCAGCGACAATCACGGCATCAAGCCTCCCACCCCAGAACAGTATCTGACTCCACTGCAACAGAAGGA
GGTTTGCATCCGGCACCTGAAGGCCCGGCTCAAGGACACACAGGACCGGCTCCAGGATAGGGACACGGAG
ATCGATGACCTTAAGACGCAGCTGTCCCGCATGCAAGAGGACTGGATTGAGGAGGAGTGCCACCGCGTAG
AAGCACAGCTGGCCCTGAAAGAGGCCCGCAAGGAGATCCGGCAGCTCAAGCAGGTCATCGACACTGTCAA
GAACAACCTGATTGACAAGGACAAGGGGCTGCAGAAGTACTTTGTGGACATCAATATCCAGAACAAGAAG
CTGGAGACCTTGCTGCACAGCATGGAGGTGGCCCAGAATGGAGTCGCCAAGGAGGAAGGAACAGGGGAGT
CAGCAGGTGGGTCTCCTGCACGGTCCCTCACCCGCAGCTCCACCTACACCAAGCTGAGTGACCCAGCCGT
CTGTGGTGACCGCCAGCCAGGGGATCCCTCCAACACCTCTGCCGAGGATGGAGCTGATAGTGGATATGTG
GCTGCCGATGACACCCTGAGTCGGACGGACGCCCTGGAGGCCAGTAGCCTACTGTCATCAGGAGTGGACT
GTGGCCTTGAGGAAGCCTCGCTGCACAGCTCCTTCAACCTGGGCCCCCGCTTCCCTGCCAGCAACACCTA
CGAGAAGCTGCTGTGCGGCATGGAGGCTGGTGTGCAGGTCAGCTGCATGCAGGAGCGGGCCATCCAGACA
GACTTTGTGCAGTACCAGCCTGACCTGAACACCATCCTGGAGAAAGTGGGCCAGGCTCAGGTGTGCGGTT
CAGTCCTCAAAGACAGGCACTCAGAGCTGGATCCCCACCCTTCAGGGCCCAGAGACCCTGACTCAGCAGT
GGTAGTCACAGTAGGTGACGAGCTTGAGGCCCCAGAGCCCATCACCTGTGGGCCAGCCACACACCGGCCT
GCAGTCAACTCTAACCCAGGACTGCCCGTGAGTGTGGTGTGTCCCGTGGAAGAGGAGGAGGAGGAGGCAG
CCGCTGCCACCACCACCGAAAAGGAACCCAAGAGTTACTGGAGCCGCCACTACATCGTGGATCTGCTGGC
TGTGGTAGTGCCAGCTGTGCCAACAGTGGCCTGGCTCTGCCGCTCCCAGCGGCGTCAGGGCCAGCCCATT
TACAACATCAGCTCCCTGCTGCGGGGTTGCTGCACGGTGGCCTTGCACTCCATCCGTAGGATCAGCTGCC
GCTCACTGGGCCAGCCGAGCTCCAGCACAGCCGGTGGCTCTCAGCTCTGA

Translation (459 aa):
MAMSLQGSRRASAGSRRRSMKYTLCSDNHGIKPPTPEQYLTPLQQKEVCIRHLKARLKDTQDRLQDRDTE
IDDLKTQLSRMQEDWIEEECHRVEAQLALKEARKEIRQLKQVIDTVKNNLIDKDKGLQKYFVDINIQNKK
LETLLHSMEVAQNGVAKEEGTGESAGGSPARSLTRSSTYTKLSDPAVCGDRQPGDPSNTSAEDGADSGYV
AADDTLSRTDALEASSLLSSGVDCGLEEASLHSSFNLGPRFPASNTYEKLLCGMEAGVQVSCMQERAIQT
DFVQYQPDLNTILEKVGQAQVCGSVLKDRHSELDPHPSGPRDPDSAVVVTVGDELEAPEPITCGPATHRP
AVNSNPGLPVSVVCPVEEEEEEAAAATTTEKEPKSYWSRHYIVDLLAVVVPAVPTVAWLCRSQRRQGQPI
YNISSLLRGCCTVALHSIRRISCRSLGQPSSSTAGGSQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH