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Report for CCDS19859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19859.1 Public Mus musculus 5 Cpsf4 23 108 98 CCDS HistoryNCBI Gene:54188Re-query CCDS DB by CCDS ID:19859.1Re-query CCDS DB by GeneID:54188See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19859.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070487.11 ENSMUSP00000069243.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070487.11Link to Ensembl Protein Viewer:ENSMUSP00000069243.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000070487Re-query CCDS DB by Protein ID:ENSMUSP00000069243
Original member Current member NCBI NM_178576.3 NP_848671.1 Accepted alive Link to Nucleotide Sequence:NM_178576.3Link to Protein Sequence:NP_848671.1Re-query CCDS DB by Nucleotide ID:NM_178576Re-query CCDS DB by Protein ID:NP_848671Link to BLAST:NP_848671.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848671.1 211 Q8BQZ5-1 211 100% 0 0

Chromosomal Locations for CCDS 19859.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 145167357 145167459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145170515 145170565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145173307 145173459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145176111 145176204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145177230 145177302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145178836 145178928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145181136 145181204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGCAGGAAATAATCGCCAGCGTAGATCACATCAAGTTCGACTTGGAGATCGCCGTGGAGCAGCAGCTCG
GGGCGCAGCCGCTGCCCTTCCCCGGCATGGATAAGTCGGGGGCTGCTGTCTGTGAATTCTTTTTGAAAGC
CGCCTGTGGCAAAGGGGGCATGTGTCCATTCCGCCACATCAGTGGTGAGAAGACAGTTGTGTGCAAACAC
TGGCTGAGAGGACTGTGCAAGAAAGGGGACCAGTGTGAGTTCTTGCATGAATATGACATGACCAAGATGC
CTGAGTGCTACTTTTACTCCAAGTTCGGTCCCCTGTGTAGGCATCGGCACACCCGGAGAGTCATTTGTGT
GAACTACCTTGTTGGATTCTGCCCTGAGGGACCATCATGTAAATTCATGCACCCTCGATTTGAACTGCCC
ATGGGAACCACTGAGCAACCCCCACTACCGCAGCAGACACAGCCTCCAACAAAGAGAGCCCCGCAGGTCA
TTGGGGTCATGCAGAGTCAAAACAGCAGTGCAGGCAACCGGGGACCCCGGCCGCTGGAGCAAGTCACTTG
CTACAAGTGTGGTGAGAAAGGACACTACGCCAACAGATGCACCAAAGGGCATTTGGCCTTTCTCAGTGGG
CAGTGA

Translation (211 aa):
MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKH
WLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELP
MGTTEQPPLPQQTQPPTKRAPQVIGVMQSQNSSAGNRGPRPLEQVTCYKCGEKGHYANRCTKGHLAFLSG
Q


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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