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Report for CCDS30942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30942.1 Public Homo sapiens 1 CACYBP 24 110 108 CCDS HistoryNCBI Gene:27101Re-query CCDS DB by CCDS ID:30942.1Re-query CCDS DB by GeneID:27101See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30942.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000405362.1 ENSP00000385771.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405362.1Link to Ensembl Protein Viewer:ENSP00000385771.1Re-query CCDS DB by Nucleotide ID:ENST00000405362Re-query CCDS DB by Protein ID:ENSP00000385771
Original member Current member EBI ENST00000613570.4 ENSP00000479414.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613570.4Link to Ensembl Protein Viewer:ENSP00000479414.1Re-query CCDS DB by Nucleotide ID:ENST00000613570Re-query CCDS DB by Protein ID:ENSP00000479414
Original member Current member NCBI NM_001007214.1 NP_001007215.1 Accepted alive Link to Nucleotide Sequence:NM_001007214.1Link to Protein Sequence:NP_001007215.1Re-query CCDS DB by Nucleotide ID:NM_001007214Re-query CCDS DB by Protein ID:NP_001007215Link to BLAST:NP_001007215.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007215.1 185 Q9HB71-3 185 100% 0 0

Chromosomal Locations for CCDS 30942.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 175004728 175004833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175006745 175006841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175007098 175007197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175008609 175008706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175009923 175010079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGCAACAGAAATCACAGAAGAAAGCAGAACTTCTTGATAATGAAAAACCAGCTGCTGTGGTTGCTCCCA
TTACAACGGGCTATACGGTGAAAATCAGTAATTATGGATGGGATCAGTCAGATAAGTTTGTGAAAATCTA
CATTACCTTAACTGGAGTTCATCAAGTTCCCACTGAGAATGTGCAGGTGCATTTCACAGAGAGGTCATTT
GATCTTTTGGTAAAGAATCTAAATGGGAAGAGTTACTCCATGATTGTGAACAATCTCTTGAAACCCATCT
CTGTGGAAGGCAGTTCAAAAAAAGTCAAGACTGATACAGTTCTTATATTGTGTAGAAAGAAAGTGGAAAA
CACAAGGTGGGATTACCTGACCCAGGTTGAAAAGGAGTGCAAAGAAAAAGAGAAGCCCTCCTATGACACT
GAAACAGATCCTAGTGAGGGATTGATGAATGTTCTAAAGAAAATTTATGAAGATGGAGACGATGATATGA
AGCGAACCATTAATAAAGCCTGGGTGGAATCAAGAGAGAAGCAAGCCAAAGGAGACACGGAATTTTGA

Translation (185 aa):
MQQKSQKKAELLDNEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSF
DLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVEKECKEKEKPSYDT
ETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVESREKQAKGDTEF


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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