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Report for CCDS30429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30429.1 Public Mus musculus X Il1rapl2 23 108 98 CCDS HistoryNCBI Gene:60367Re-query CCDS DB by CCDS ID:30429.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30429.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075471.3 ENSMUSP00000074917.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075471.3Link to Ensembl Protein Viewer:ENSMUSP00000074917.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000075471Re-query CCDS DB by Protein ID:ENSMUSP00000074917
Original member Current member EBI ENSMUST00000113063.7 ENSMUSP00000108686.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113063.7Link to Ensembl Protein Viewer:ENSMUSP00000108686.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113063Re-query CCDS DB by Protein ID:ENSMUSP00000108686
Original member Current member NCBI NM_030688.2 NP_109613.1 Accepted alive Link to Nucleotide Sequence:NM_030688.2Link to Protein Sequence:NP_109613.1Re-query CCDS DB by Nucleotide ID:NM_030688Re-query CCDS DB by Protein ID:NP_109613Link to BLAST:NP_109613.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109613.1 686 Q9ERS6-1 686 100% 0 0

Chromosomal Locations for CCDS 30429.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 137651720 137651801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138174529 138174802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138220385 138220571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138236500 138236653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138504984 138505058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138789560 138789689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138816312 138816457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138826541 138826684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138834528 138834698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138845927 138846624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2061 nt):
ATGAAGCTGCCACTTCTTCTGGCCCTGGTGGTCTGTTCTGCAGTCAGTACAAATTTGAAGATGGTGTCAA
AAAGAAATTCTGTGGATGGCTGCATTGATTGGTCGGTGGATCTCAAGACATACATGGCTTTGGCAGGTGA
ACCTGTCCGAGTGAAATGTGCCCTTTTCTACAGTTATATCCGCACCAACTACAGCATGGCCCAGAGTACC
GGGCTCAGGCTCATGTGGTATAGAAACAAAGGTGACTTGGAAGAGCCCATCATCTTTTCAGAGGTCAGGA
TGAGTAAAGAGGAAGACGCCATATGGTTTCACTCAGCTGAGGAACAAGACAGTGGATTCTACACTTGTGT
TTTAAGAAACTCCACATATTGCATGAAGGTGTCAATGTCCTTGACTGTTGCAGAGAATGAATCAGGCCTG
TGCTACAATAGCAGGATCCGCTACTTAGAGAAATCTGAAGTTACCAAAAGAAAGGAGATCTCATGCCCAG
ACATGGATGACTTTAAGAAGTCTGATCAGGAACCTGATGTCGTATGGTACAAGGAATGCAAGCCAAAAAT
GTGGAGAAGCATAATAATACAGAAGGGAAATGCTCTTCTCATCCAAGAAGTTCAAGAAGAAGATGGAGGA
AATTATACATGTGAACTTAAATATGAAGGAAAACTTGTAAGACGAACAACAGAATTGAAAGTTACAGCTT
TACTCACAGACAAGCCTCCCAAGCCATTGTTCCCCATGGAAAATCAGCCAAGTGTTATAGATGTCCAGCT
GGGTAAACCTCTGAACATCCCTTGCAAAGCTTTCTTTGGATTCAGTGGGGAGTCTGGACCAATGATCTAC
TGGATGAAAGGCGAGAAGTTTATTGAAGAACTGGCAGGTCACATTAGAGAAGGTGAAATAAGGCTCCTCA
AAGAGCATCTTGGAGAAAAAGAAGTTGAGTTGACACTTATCTTTGACTCAGTGGTAGAAGCTGACTTGGC
TAATTATACCTGCCATGTGGAGAACAGAAATGGACGGAAACACGCCAGTGTTCTACTGCGAAAAAAGGAT
TTAATATACAAAATTGAGCTTGCAGGGGGCCTAGGAGCAATCTTCCTACTACTTATACTGCTACTGGTGG
TCTACAAATGCTACAACATAGAACTGATGCTTTTCTACAGACAGCGTTTTGGAGGTGATGAAACTACTGA
TGACAACAAGGAATATGATGCGTATCTCTCTTACACAAAAGTGGATCAAGATACTTTGGACTGTGACAAT
ACTGAGGAAGAGCAGTTTGCTCTTGAAATACTGCCAGATGTCTTAGAAAAACACTATGGATATAAACTCT
TCATCCCAGAAAGGGATCTCATTCCAAGTGGAACATATATTGAAGATCTCACAAGATGTGTTGAGCAAAG
CAGACGACTTATTATCGTGCTAACTCCAGACTATATTCTCAGACGGGGATGGAGTATTTTCGAACTGGAA
AGCAGACTCCATAACATGCTAGTCAGTGGAGAAATCAAAGTGATTTTGATTGAGTGTACAGAATTAAAAG
GGAAGGTGAATTGCCAGGAAGTGGAATCACTAAAGCACAACATCAAACTTCTGTCACTGATCAAGTGGAA
GGGACCCAAAAGCAGCAAATTAAATTCTAAGTTTTGGAAGCACTTAGTGTATGAAATGCCCATCAAGAAA
AAAGAAATGCTATCCCACTGCCATGTTCTAGACTCTGCCGAGCAGGGGCTTTTTGGAGAACTTCAGCCTA
TACCTTCAATTGCCATGACGAGTACCTCAGCCACAATGGTGCCATCGCAAGCTGATCTCCCTGAGTTCCA
TCATTCGGATTCAATGCAAATGAGGCACTGTTGCAGAGGATACCAACACGAGATGCCAGCCAACACCCTG
TCAGTACCCTCCTTAGGCAACCACCACACTTACTGTAACTTGCCACTGACACTACTCAATGGACAGCTAC
CCCTTAACAACTCCTTAAAAGAGACTGAGGAATTTTCAAGGAACAATCCCCTACTGCCATTAACATCCAA
AGAGCTTAGCTTCACCAGTGATATTTGGTAG

Translation (686 aa):
MKLPLLLALVVCSAVSTNLKMVSKRNSVDGCIDWSVDLKTYMALAGEPVRVKCALFYSYIRTNYSMAQST
GLRLMWYRNKGDLEEPIIFSEVRMSKEEDAIWFHSAEEQDSGFYTCVLRNSTYCMKVSMSLTVAENESGL
CYNSRIRYLEKSEVTKRKEISCPDMDDFKKSDQEPDVVWYKECKPKMWRSIIIQKGNALLIQEVQEEDGG
NYTCELKYEGKLVRRTTELKVTALLTDKPPKPLFPMENQPSVIDVQLGKPLNIPCKAFFGFSGESGPMIY
WMKGEKFIEELAGHIREGEIRLLKEHLGEKEVELTLIFDSVVEADLANYTCHVENRNGRKHASVLLRKKD
LIYKIELAGGLGAIFLLLILLLVVYKCYNIELMLFYRQRFGGDETTDDNKEYDAYLSYTKVDQDTLDCDN
TEEEQFALEILPDVLEKHYGYKLFIPERDLIPSGTYIEDLTRCVEQSRRLIIVLTPDYILRRGWSIFELE
SRLHNMLVSGEIKVILIECTELKGKVNCQEVESLKHNIKLLSLIKWKGPKSSKLNSKFWKHLVYEMPIKK
KEMLSHCHVLDSAEQGLFGELQPIPSIAMTSTSATMVPSQADLPEFHHSDSMQMRHCCRGYQHEMPANTL
SVPSLGNHHTYCNLPLTLLNGQLPLNNSLKETEEFSRNNPLLPLTSKELSFTSDIW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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