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Report for CCDS9316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9316.1 Public Homo sapiens 13 RNF6 24 110 108 CCDS HistoryNCBI Gene:6049Re-query CCDS DB by CCDS ID:9316.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9316.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000346166.7 ENSP00000342121.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000346166.7Link to Ensembl Protein Viewer:ENSP00000342121.3Re-query CCDS DB by Nucleotide ID:ENST00000346166Re-query CCDS DB by Protein ID:ENSP00000342121
Original member Current member EBI ENST00000381570.7 ENSP00000370982.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381570.7Link to Ensembl Protein Viewer:ENSP00000370982.3Re-query CCDS DB by Nucleotide ID:ENST00000381570Re-query CCDS DB by Protein ID:ENSP00000370982
Original member Current member EBI ENST00000381588.9 ENSP00000371000.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381588.9Link to Ensembl Protein Viewer:ENSP00000371000.4Re-query CCDS DB by Nucleotide ID:ENST00000381588Re-query CCDS DB by Protein ID:ENSP00000371000
Original member Current member NCBI NM_005977.4 NP_005968.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005977.4Link to Protein Sequence:NP_005968.1Re-query CCDS DB by Nucleotide ID:NM_005977Re-query CCDS DB by Protein ID:NP_005968Link to BLAST:NP_005968.1
Original member Current member NCBI NM_183043.3 NP_898864.1 Accepted alive Link to Nucleotide Sequence:NM_183043.3Link to Protein Sequence:NP_898864.1Re-query CCDS DB by Nucleotide ID:NM_183043Re-query CCDS DB by Protein ID:NP_898864Link to BLAST:NP_898864.1
Original member Current member NCBI NM_183044.3 NP_898865.1 Accepted alive Link to Nucleotide Sequence:NM_183044.3Link to Protein Sequence:NP_898865.1Re-query CCDS DB by Nucleotide ID:NM_183044Re-query CCDS DB by Protein ID:NP_898865Link to BLAST:NP_898865.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005968.1 685 Q9Y252-1 685 100% 0 0
NP_898864.1 685 Q9Y252-1 685 100% 0 0
NP_898865.1 685 Q9Y252-1 685 100% 0 0

Chromosomal Locations for CCDS 9316.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 26213824 26215592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 26218511 26218606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 26219457 26219649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2058 nt):
ATGAATCAGTCTAGATCGAGATCAGATGGTGGCAGTGAAGAAACCTTACCTCAAGACCATAATCATCATG
AA
AATGAGAGAAGATGGCAGCAAGAGCGTCTCCACAGAGAAGAGGCCTATTATCAGTTTATTAATGAACT
C
AATGATGAAGATTATCGGCTTATGAGAGACCATAATCTTTTAGGCACCCCTGGAGAAATAACATCAGAA
GAA
CTGCAACAGCGGTTAGATGGCGTCAAGGAACAACTAGCATCTCAGCCTGACTTGAGAGATGGAACGA
AT
TACAGAGACTCAGAAGTCCCTAGAGAAAGTTCACATGAAGATTCTCTTCTAGAATGGTTGAACACCTT
T
CGGCGCACAGGAAATGCAACTCGAAGTGGACAAAATGGGAACCAAACTTGGAGAGCTGTGAGTCGAACA
AAC
CCGAACAATGGAGAGTTTCGGTTTAGTTTGGAAATCCACGTAAATCATGAAAATAGAGGATTTGAAA
TT
CATGGAGAAGATTATACAGACATTCCACTTTCAGATAGTAACAGAGATCATACTGCAAATAGGCAACA
A
AGGTCAACTAGTCCTGTGGCTAGGCGAACAAGAAGCCAAACCTCAGTGAATTTCAATGGTAGTAGTTCC
AAC
ATTCCAAGGACTAGGCTTGCTTCAAGGGGGCAAAATCCAGCTGAAGGATCTTTCTCAACATTGGGAA
GG
TTAAGAAATGGAATTGGGGGAGCAGCTGGCATTCCTCGAGCTAACGCTTCACGCACTAATTTCAGTAG
T
CACACAAACCAATCAGGTGGTAGTGAACTCAGGCAAAGGGAGGGGCAACGGTTTGGAGCAGCACATGTT
TGG
GAAAATGGGGCTAGAAGTAATGTTACAGTGAGGAATACAAACCAAAGATTAGAGCCAATAAGATTAC
GA
TCTACTTCCAATAGTCGAAGCCGTTCACCAATTCAGAGACAGAGTGGCACTGTTTATCATAATTCCCA
A
AGGGAAAGTAGACCAGTACAGCAAACCACTAGAAGATCTGTTAGGAGGAGAGGTAGAACTCGAGTCTTT
TTA
GAGCAAGATAGAGAACGAGAACGCAGAGGTACTGCATATACCCCATTCTCTAATTCAAGGCTTGTGT
CA
AGAATAACAGTAGAAGAAGGAGAAGAATCCAGCAGATCCTCAACTGCTGTACGACGACATCCAACAAT
C
ACACTGGACCTTCAAGTGAGAAGGATCCGTCCTGGAGAAAATAGAGATCGGGATAGTATTGCAAATAGA
ACT
CGATCCAGAGTAGGGCTAGCAGAAAATACAGTCACTATTGAAAGCAATAGTGGGGGCTTTCGCCGAA
CC
ATTTCTCGTTTAGAGCGGTCAGGTATTCGAACCTATGTTAGTACCATAACAGTTCCTCTTCGTAGGAT
T
TCTGAGAATGAGCTTGTTGAGCCATCATCAGTGGCTCTTCGGTCAATTTTAAGGCAGATCATGACTGGG
TTT
GGAGAACTGAGTTCTCTAATGGAGGCCGATTCTGAGTCAGAACTTCAAAGAAATGGCCAGCATTTAC
CA
GACATGCACTCAGAACTGAGTAACTTAGGTACAGATAACAACAGGAGCCAGCACAGGGAAGGTTCCTC
T
CAAGACAGGCAGGCCCAAGGAGACAGCACTGAAATGCATGGTGAAAACGAGACCACCCAGCCTCATACT
CGA
AACAGTGACAGTAGGGGTGGCAGGCAGTTGCGAAATCCAAACAATTTAGTTGAAACTGGAACACTAC
CC
ATTCTTCGCCTTGCTCACTTTTTTTTACTAAATGAAAGTGATGATGATGATCGAATACGTGGTTTAAC
C
AAAGAGCAGATTGACAATCTTTCCACCAGGCACTATGAGCATAACAGTATTGATAGTGAACTAGGTAAA
ATC
TGTAGTGTTTGTATTAGTGACTATGTAACTGGAAACAAGCTCAGGCAATTACCTTGCATGCATGAAT
TT
CACATTCATTGTATTGACCGATGGCTCTCAGAGAATTGCACTTGTCCGATCTGTCGGCAGCCTGTTTT
A
GGGTCTAACATAGCAAACAATGGGTAA


Translation (685 aa):
MNQSRSRSDGGSEETLPQDHNHHENERRWQQERLHREEAYYQFINELNDEDYRLMRDHNLLGTPGEITSE
E
LQQRLDGVKEQLASQPDLRDGTNYR
DSEVPRESSHEDSLLEWLNTFRRTGNATRSGQNGNQTWRAVSRT
N
PNNGEFRFSLEIHVNHENRGFEIHGEDYTDIPLSDSNRDHTANRQQRSTSPVARRTRSQTSVNFNGSSS
N
IPRTRLASRGQNPAEGSFSTLGRLRNGIGGAAGIPRANASRTNFSSHTNQSGGSELRQREGQRFGAAHV
W
ENGARSNVTVRNTNQRLEPIRLRSTSNSRSRSPIQRQSGTVYHNSQRESRPVQQTTRRSVRRRGRTRVF
L
EQDRERERRGTAYTPFSNSRLVSRITVEEGEESSRSSTAVRRHPTITLDLQVRRIRPGENRDRDSIANR
T
RSRVGLAENTVTIESNSGGFRRTISRLERSGIRTYVSTITVPLRRISENELVEPSSVALRSILRQIMTG
F
GELSSLMEADSESELQRNGQHLPDMHSELSNLGTDNNRSQHREGSSQDRQAQGDSTEMHGENETTQPHT
R
NSDSRGGRQLRNPNNLVETGTLPILRLAHFFLLNESDDDDRIRGLTKEQIDNLSTRHYEHNSIDSELGK
I
CSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICRQPVLGSNIANNG




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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