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Report for CCDS38327.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38327.1 Public Mus musculus 2 Wfdc13 23 108 98 CCDS HistoryNCBI Gene:408190Re-query CCDS DB by CCDS ID:38327.1Re-query CCDS DB by GeneID:408190See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38327.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088260.1 ENSMUSP00000085594.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088260.1Link to Ensembl Protein Viewer:ENSMUSP00000085594.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000088260Re-query CCDS DB by Protein ID:ENSMUSP00000085594
Original member Current member NCBI NM_001012704.1 NP_001012722.1 Accepted alive Link to Nucleotide Sequence:NM_001012704.1Link to Protein Sequence:NP_001012722.1Re-query CCDS DB by Nucleotide ID:NM_001012704Re-query CCDS DB by Protein ID:NP_001012722Link to BLAST:NP_001012722.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012722.1 81 Q5DQQ6 81 100% 0 0

Chromosomal Locations for CCDS 38327.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164685219 164685306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164686833 164686990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (246 nt):
ATGAGACCTGTGTCACCTTTGCAGCTCCTGCTGGTGCTCAGCCTAGCACCACAGCCAGTGCTTGGAAGTC
CCAAGCAATACTTTCTGAAGTACATCCTGGAACCTCCACCGTGCAGATCGGAGCCCGGAGCGTGCAACAT
GTTCTGTACGCAGCAGGAGGAATGCCCTGAACCGCTTCAGTGCTGTTCCGCCTACTGTGGGATAGTGTGT
ACCTCAAACCAAGCCCCAGTACTAGGGCTCTCCTAA

Translation (81 aa):
MRPVSPLQLLLVLSLAPQPVLGSPKQYFLKYILEPPPCRSEPGACNMFCTQQEECPEPLQCCSAYCGIVC
TSNQAPVLGLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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