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Report for CCDS14270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14270.1 Public Homo sapiens X RP2 24 110 108 CCDS HistoryNCBI Gene:6102Re-query CCDS DB by CCDS ID:14270.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14270.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000218340.4 ENSP00000218340.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000218340.4Link to Ensembl Protein Viewer:ENSP00000218340.3Re-query CCDS DB by Nucleotide ID:ENST00000218340Re-query CCDS DB by Protein ID:ENSP00000218340
Original member Current member NCBI NM_006915.3 NP_008846.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006915.3Link to Protein Sequence:NP_008846.2Re-query CCDS DB by Nucleotide ID:NM_006915Re-query CCDS DB by Protein ID:NP_008846Link to BLAST:NP_008846.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008846.2 350 O75695 350 100% 0 0

Chromosomal Locations for CCDS 14270.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 46837101 46837202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 46853476 46854141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 46859988 46860102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 46877505 46877590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 46879686 46879769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGGCTGCTTCTTCTCCAAGAGACGGAAGGCTGACAAGGAGTCGCGGCCCGAGAACGAGGAGGAGCGGC
CA
AAGCAGTACAGCTGGGATCAGCGCGAGAAGGTTGATCCAAAAGACTACATGTTCAGTGGACTGAAGGA
T
GAAACAGTAGGTCGCTTACCTGGGACGGTAGCAGGACAACAGTTTCTCATTCAAGACTGTGAGAACTGT
AAC
ATCTATATTTTTGATCACTCTGCTACAGTTACCATTGATGACTGTACTAACTGCATAATTTTTCTGG
GA
CCCGTGAAAGGCAGCGTGTTTTTCCGGAATTGCAGAGATTGCAAGTGCACATTAGCCTGCCAACAATT
T
CGTGTGCGAGATTGTAGAAAGCTGGAAGTCTTTTTGTGTTGTGCCACTCAACCCATCATTGAGTCTTCC
TCA
AATATCAAATTTGGATGTTTTCAATGGTACTATCCTGAATTAGCTTTCCAGTTCAAAGATGCAGGGC
TA
AGTATCTTCAACAATACATGGAGTAACATTCATGACTTTACACCTGTGTCAGGAGAACTCAACTGGAG
C
CTTCTTCCAGAAGATGCTGTGGTTCAGGACTATGTTCCTATACCTACTACCGAAGAGCTCAAAGCTGTT
CGT
GTTTCCACAGAAGCCAATAGAAGCATTGTTCCAATATCCCGGGGTCAGAGACAGAAGAGCAGCGATG
AA
TCATGCTTAGTGGTATTATTTGCTGGTGATTACACTATTGCAAATGCCAGAAAACTAATTGATGAGAT
G
GTTGGTAAAGGCTTTTTCCTAGTTCAGACAAAGGAAGTGTCCATGAAAGCTGAGGATGCTCAAAGGGTT
TTT
CGGGAAAAAGCACCTGACTTCCTTCCTCTTCTGAACAAAGGTCCTGTTATTGCCTTGGAGTTTAATG
GG
GATGGTGCTGTAGAAGTATGTCAACTTATTGTAAACGAGATATTCAATGGGACCAAGATGTTTGTATC
T
GAAAGCAAGGAGACGGCATCTGGAGATGTAGACAGCTTCTACAACTTTGCTGATATACAGATGGGAATA
TGA


Translation (350 aa):
MGCFFSKRRKADKESRPENEEERPKQYSWDQREKVDPKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENC
N
IYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIESS
S
NIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVSGELNWSLLPEDAVVQDYVPIPTTEELKAV
R
VSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIANARKLIDE
MVGKGFFLVQTKEVSMKAEDAQRV
F
REKAPDFLPLLNK
GPVIALEFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQMGI



Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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