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Report for CCDS2845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2845.1 Public Homo sapiens 3 RPL29 24 110 108 CCDS HistoryNCBI Gene:6159Re-query CCDS DB by CCDS ID:2845.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2845.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294189.11 ENSP00000294189.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000294189.11Link to Ensembl Protein Viewer:ENSP00000294189.4Re-query CCDS DB by Nucleotide ID:ENST00000294189Re-query CCDS DB by Protein ID:ENSP00000294189
Original member Current member EBI ENST00000475248.5 ENSP00000417048.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000475248.5Link to Ensembl Protein Viewer:ENSP00000417048.1Re-query CCDS DB by Nucleotide ID:ENST00000475248Re-query CCDS DB by Protein ID:ENSP00000417048
Original member Current member EBI ENST00000479017.5 ENSP00000418153.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000479017.5Link to Ensembl Protein Viewer:ENSP00000418153.1Re-query CCDS DB by Nucleotide ID:ENST00000479017Re-query CCDS DB by Protein ID:ENSP00000418153
Original member Current member EBI ENST00000466397.5 ENSP00000418868.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000466397.5Link to Ensembl Protein Viewer:ENSP00000418868.1Re-query CCDS DB by Nucleotide ID:ENST00000466397Re-query CCDS DB by Protein ID:ENSP00000418868
Original member Current member EBI ENST00000495383.5 ENSP00000420673.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000495383.5Link to Ensembl Protein Viewer:ENSP00000420673.1Re-query CCDS DB by Nucleotide ID:ENST00000495383Re-query CCDS DB by Protein ID:ENSP00000420673
Original member Current member NCBI NM_000992.3 NP_000983.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000992.3Link to Protein Sequence:NP_000983.1Re-query CCDS DB by Nucleotide ID:NM_000992Re-query CCDS DB by Protein ID:NP_000983Link to BLAST:NP_000983.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000983.1 159 P47914 159 100% 0 0

Chromosomal Locations for CCDS 2845.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51993749 51994126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51995042 51995106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51995425 51995461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGGCCAAGTCCAAGAACCACACCACACACAACCAGTCCCGAAAATGGCACAGAAATGGTATCAAGAAAC
CCCGATCACAAAGATACGAATCTCTTAAGGGGGTGGACCCCAAGTTCCTGAGGAACATGCGCTTTGCCAA
GAAGCACAACAAAAAGGGCCTAAAGAAGATGCAGGCCAACAATGCCAAGGCCATGAGTGCACGTGCCGAG
GCTATCAAGGCCCTCGTAAAGCCCAAGGAGGTTAAGCCCAAGATCCCAAAGGGTGTCAGCCGCAAGCTCG
ATCGACTTGCCTACATTGCCCACCCCAAGCTTGGGAAGCGTGCTCGTGCCCGTATTGCCAAGGGGCTCAG
GCTGTGCCGGCCAAAGGCCAAGGCCAAGGCCAAGGCCAAGGATCAAACCAAGGCCCAGGCTGCAGCCCCA
GCTTCAGTTCCAGCTCAGGCTCCCAAACGTACCCAGGCCCCTACAAAGGCTTCAGAGTAG

Translation (159 aa):
MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQANNAKAMSARAE
AIKALVKPKEVKPKIPKGVSRKLDRLAYIAHPKLGKRARARIAKGLRLCRPKAKAKAKAKDQTKAQAAAP
ASVPAQAPKRTQAPTKASE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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