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Report for CCDS43617.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43617.1 Public Homo sapiens 7 VPS50 24 110 108 CCDS HistoryNCBI Gene:55610Re-query CCDS DB by CCDS ID:43617.1Re-query CCDS DB by GeneID:55610See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43617.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305866.10 ENSP00000307666.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000305866.10Link to Ensembl Protein Viewer:ENSP00000307666.5Re-query CCDS DB by Nucleotide ID:ENST00000305866Re-query CCDS DB by Protein ID:ENSP00000307666
Original member Current member NCBI NM_017667.4 NP_060137.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017667.4Link to Protein Sequence:NP_060137.2Re-query CCDS DB by Nucleotide ID:NM_017667Re-query CCDS DB by Protein ID:NP_060137Link to BLAST:NP_060137.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060137.2 964 Q96JG6-1 964 100% 0 0

Chromosomal Locations for CCDS 43617.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 93232468 93232500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93239866 93239934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93252653 93252775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93253860 93253931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93256509 93256562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93257394 93257464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93258159 93258276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93258357 93258392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93259550 93259632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93271220 93271262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93272635 93272733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93276165 93276305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93291703 93291835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93294545 93294636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93296742 93296836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93297145 93297243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93303460 93303550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93305828 93306004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93308824 93308942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93311166 93311272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93323611 93323732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93334117 93334197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93341427 93341575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93348711 93348807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93349875 93350033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93353640 93353761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93355891 93356080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93358317 93358436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2895 nt):
ATGCAAAAAATCAAATCTCTCATGACCCGACAGGGTCTGAAAAGCCCTCAAGAAAGCCTCAGTGATCTTG
GTGCCATAGAGAGTCTCCGGGTCCCTGGAAAGGAAGAATTCAGGGAACTTCGAGAACAGCCAAGTGACCC
TCAAGCTGAACAAGAGCTTATTAATAGTATTGAACAAGTATATTTTTCTGTGGATTCATTTGATATTGTT
AAATATGAGCTGGAGAAGCTTCCACCTGTTCTCAATTTGCAAGAATTAGAGGCGTATAGAGACAAATTGA
AACAACAGCAAGCTGCAGTATCTAAAAAAGTGGCAGATTTAATCCTTGAAAAACAGCCTGCTTATGTAAA
GGAACTTGAAAGAGTTACCTCATTGCAGACAGGTCTTCAATTAGCTGCTGTTATCTGTACAAATGGGAGA
AGACACTTGAATATTGCAAAGGAAGGTTTTACTCAAGCTAGTTTAGGCCTTCTTGCAAATCAAAGGAAAC
GTCAGTTGCTGATTGGACTTCTGAAATCTCTGAGAACTATAAAAACATTGCAAAGAACAGATGTACGGTT
AAGTGAAATGCTGGAGGAGGAAGATTATCCAGGAGCTATTCAGTTGTGCCTTGAATGTCAAAAAGCTGCC
AGCACTTTTAAACATTACAGTTGTATAAGTGAACTGAATTCAAAGCTGCAAGATACTTTGGAACAGATTG
AGGAACAGCTGGACGTAGCTCTTTCCAAAATCTGCAAGAATTTTGACATTAACCATTATACCAAGGTTCA
ACAAGCTTATCGACTTCTTGGAAAAACACAGACAGCAATGGATCAACTTCATATGCACTTCACCCAAGCC
ATTCACAACACCGTGTTTCAAGTTGTTCTTGGTTATGTGGAACTATGTGCAGGAAACACAGACACAAAAT
TCCAAAAGCTGCAATATAAGGATCTCTGTACACATGTTACACCAGACAGCTATATTCCATGCCTTGCAGA
CCTGTGCAAAGCACTATGGGAAGTTATGCTCAGCTATTATAGGACTATGGAATGGCATGAAAAGCATGAC
AATGAGGATACTGCTTCAGCTTCTGAAGGGAGTAATATGATAGGTACTGAAGAAACTAATTTTGATCGTG
GCTACATAAAAAAGAAATTAGAACATGGACTTACACGAATATGGCAGGATGTTCAGCTAAAAGTAAAAAC
CTACTTGCTTGGAACTGATTTGTCTATATTCAAATATGATGATTTCATCTTTGTTTTGGATATAATCAGC
AGGTTGATGCAAGTTGGAGAAGAATTTTGTGGTAGCAAGTCTGAAGTTTTACAGGAATCTATTAGAAAAC
AAAGTGTCAATTATTTCAAGAATTACCATAGAACACGGCTCGATGAACTGAGAATGTTCTTAGAGAATGA
GACTTGGGAACTTTGTCCTGTTAAGTCAAATTTCAGCATCTTGCAACTTCATGAATTTAAATTCATGGAA
CAGTCTCGCTCCCCATCAGTTTCACCTAGTAAACAGCCAGTCTCAACTTCTTCAAAAACAGTGACCTTGT
TTGAGCAGTACTGTAGTGGTGGGAATCCATTTGAAATTCAGGCCAACCACAAAGATGAAGAAACAGAAGA
TGTCTTAGCTTCTAATGGGTATGAATCTGATGAACAAGAAAAGAGTGCCTATCAAGAGTATGACAGTGAC
AGTGATGTTCCTGAGGAACTCAAACGAGACTATGTGGATGAGCAGACAGGAGATGGTCCTGTGAAAAGTG
TTTCTCGGGAAACTCTAAAAAGCAGGAAGAAATCAGATTACAGTCTAAATAAAGTGAATGCACCTATCTT
AACAAATACAACATTGAACGTCATAAGACTTGTTGGAAAATATATGCAGATGATGAACATTCTTAAGCCA
ATTGCCTTTGATGTTATTCATTTCATGTCTCAACTATTTGATTATTACTTGTATGCAATATATACCTTTT
TTGGTCGGAATGATTCATTGGAATCAACTGGACTCGGCCTTAGTAGTAGTAGACTAAGAACAACTCTAAA
CAGAATACAAGAAAGCCTTATTGATCTAGAAGTTTCAGCTGATCCTACTGCCACACTCACAGCAGCAGAA
GAAAGAAAGGAGAAGGTGCCAAGTCCACACCTCAGTCACCTAGTGGTTTTGACATCTGGGGATACGCTGT
ATGGGTTGGCAGAAAGAGTGGTAGCCACGGAATCCTTGGTATTCTTGGCTGAACAGTTTGAGTTCCTTCA
GCCACATCTGGATGCTGTGATGCCTGCAGTCAAAAAGCCCTTTCTTCAGCAGTTCTATTCTCAGACAGTC
TCAACCGCCAGTGAACTACGGAAACCAATTTACTGGATTGTAGCTGGTAAAGCCCTTGATTATGAACAGA
TGCTGCTTCTCATGGCTAATGTGAAATGGGATGTAAAAGAAATTATGTCACAGCACAACATATATGTAGA
TGCACTATTAAAGGAATTTGAGCAGTTTAACAGGAGGCTAAATGAAGTTTCTAAGAGAGTTCGCATACCC
TTGCCTGTGTCTAATATACTTTGGGAACATTGTATACGATTGGCTAATCGAACTATTGTAGAAGGATATG
CCAATGTCAAGAAATGCAGTAATGAGGGTCGTGCCCTGATGCAATTGGATTTTCAACAGTTTTTAATGAA
ACTTGAAAAACTAACAGATATTAGACCCATTCCTGATAAAGAATTTGTAGAAACTTATATTAAAGCTTAT
TACCTAACTGAGAATGACATGGAACGGTGGATCAAAGAGCACAGGGAATATTCAACGAAGCAGCTGACCA
ATCTGGTGAATGTTTGCCTGGGATCCCATATCAATAAGAAAGCAAGACAAAAACTTCTAGCAGCTATAGA
TGATATAGACAGACCTAAAAGATAA

Translation (964 aa):
MQKIKSLMTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQVYFSVDSFDIV
KYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELERVTSLQTGLQLAAVICTNGR
RHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDVRLSEMLEEEDYPGAIQLCLECQKAA
STFKHYSCISELNSKLQDTLEQIEEQLDVALSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQA
IHNTVFQVVLGYVELCAGNTDTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHD
NEDTASASEGSNMIGTEETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIIS
RLMQVGEEFCGSKSEVLQESIRKQSVNYFKNYHRTRLDELRMFLENETWELCPVKSNFSILQLHEFKFME
QSRSPSVSPSKQPVSTSSKTVTLFEQYCSGGNPFEIQANHKDEETEDVLASNGYESDEQEKSAYQEYDSD
SDVPEELKRDYVDEQTGDGPVKSVSRETLKSRKKSDYSLNKVNAPILTNTTLNVIRLVGKYMQMMNILKP
IAFDVIHFMSQLFDYYLYAIYTFFGRNDSLESTGLGLSSSRLRTTLNRIQESLIDLEVSADPTATLTAAE
ERKEKVPSPHLSHLVVLTSGDTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTV
STASELRKPIYWIVAGKALDYEQMLLLMANVKWDVKEIMSQHNIYVDALLKEFEQFNRRLNEVSKRVRIP
LPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDKEFVETYIKAY
YLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLAAIDDIDRPKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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