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Report for CCDS11158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11158.1 Public Homo sapiens 17 SCO1 24 110 108 CCDS HistoryNCBI Gene:6341Re-query CCDS DB by CCDS ID:11158.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11158.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000255390.10 ENSP00000255390.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000255390.10Link to Ensembl Protein Viewer:ENSP00000255390.5Re-query CCDS DB by Nucleotide ID:ENST00000255390Re-query CCDS DB by Protein ID:ENSP00000255390
Original member Current member NCBI NM_004589.4 NP_004580.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004589.4Link to Protein Sequence:NP_004580.1Re-query CCDS DB by Nucleotide ID:NM_004589Re-query CCDS DB by Protein ID:NP_004580Link to BLAST:NP_004580.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004580.1 301 O75880 301 100% 0 0

Chromosomal Locations for CCDS 11158.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 10681119 10681253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 10686727 10686842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 10691872 10691964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 10692764 10692961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 10695741 10695831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 10697235 10697507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGGCGATGCTGGTCCTAGTACCCGGACGAGTTATGCGGCCTCTGGGTGGCCAACTTTGGCGCTTCTTGC
CTCGCGGACTCGAGTTTTGGGGCCCAGCCGAGGGGACTGCGAGAGTCTTGCTGAGGCAGTTCTGCGCGCG
GCAAGCGGAGGCGTGGCGTGCCTCGGGGCGCCCTGGCTATTGCCTGGGAACCCGGCCCCTCAGCACTGCG
AGGCCGCCACCCCCGTGGTCGCAGAAGGGCCCCGGAGACTCCACGCGCCCCTCGAAGCCCGGGCCTGTTT
CCTGGAAGTCTTTAGCAATCACATTTGCTATTGGAGGAGCTTTACTGGCTGGAATGAAGCACGTCAAGAA
AGAAAAGGCAGAGAAGTTAGAGAAGGAACGGCAGCGACACATCGGCAAGCCTTTACTTGGGGGACCGTTT
TCCCTCACAACTCATACTGGGGAGCGTAAAACTGACAAGGACTACTTGGGTCAGTGGTTATTGATTTATT
TTGGCTTCACTCATTGCCCTGATGTCTGTCCAGAAGAACTAGAAAAGATGATTCAAGTCGTGGATGAAAT
AGATAGCATTACAACTCTGCCAGATCTAACTCCACTTTTCATCAGCATTGACCCAGAGAGGGACACAAAA
GAAGCCATCGCAAATTATGTGAAAGAATTTTCTCCCAAACTGGTTGGCTTGACTGGCACGAGAGAAGAGG
TCGATCAAGTGGCCAGAGCATACAGAGTGTATTACAGCCCTGGCCCCAAGGACGAAGATGAAGACTACAT
AGTGGATCACACAATAATAATGTACTTGATTGGACCAGATGGTGAGTTTCTAGATTATTTTGGCCAGAAC
AAGAGGAAGGGAGAAATAGCTGCTTCAATTGCCACACACATGAGGCCATACAGAAAAAAGAGCTAG

Translation (301 aa):
MAMLVLVPGRVMRPLGGQLWRFLPRGLEFWGPAEGTARVLLRQFCARQAEAWRASGRPGYCLGTRPLSTA
RPPPPWSQKGPGDSTRPSKPGPVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPF
SLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTK
EAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQN
KRKGEIAASIATHMRPYRKKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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