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Report for CCDS13484.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13484.1 Public Homo sapiens 20 FAM217B 24 110 108 CCDS HistoryNCBI Gene:63939Re-query CCDS DB by CCDS ID:13484.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13484.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358293.7 ENSP00000351040.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358293.7Link to Ensembl Protein Viewer:ENSP00000351040.3Re-query CCDS DB by Nucleotide ID:ENST00000358293Re-query CCDS DB by Protein ID:ENSP00000351040
Original member Current member EBI ENST00000360816.8 ENSP00000354056.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360816.8Link to Ensembl Protein Viewer:ENSP00000354056.3Re-query CCDS DB by Nucleotide ID:ENST00000360816Re-query CCDS DB by Protein ID:ENSP00000354056
Original member Current member NCBI NM_001190826.2 NP_001177755.1 Accepted alive Link to Nucleotide Sequence:NM_001190826.2Link to Protein Sequence:NP_001177755.1Re-query CCDS DB by Nucleotide ID:NM_001190826Re-query CCDS DB by Protein ID:NP_001177755Link to BLAST:NP_001177755.1
Original member Current member NCBI NM_022106.3 NP_071389.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022106.3Link to Protein Sequence:NP_071389.1Re-query CCDS DB by Nucleotide ID:NM_022106Re-query CCDS DB by Protein ID:NP_071389Link to BLAST:NP_071389.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177755.1 383 Q9NTX9 383 100% 0 0
NP_071389.1 383 Q9NTX9 383 100% 0 0

Chromosomal Locations for CCDS 13484.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 59943944 59945095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1152 nt):
ATGAATGCTGGCCCATCTTGGAATAAAGTGCAACATTCAAAGAATTCTTCAGGAAAAAGGCAGAGTAAAT
CCCAAGTACCCCACGCTTCTTCCCAGCCGAGAAGCAGCCTCACAGCTGTCACCCAGCCTACTGAAGAAAA
ACTTAAAGAAAGCATTTCCCCGGAAGCAAGACGCAAAAGGAATCCACTCGGTTCCAGGTGTCAGGGGGCC
TCAGGGAATAAACTGTTTCTTGATTTTCAGTCAATGAAAATTATTAAAGAGAATGCTGATGAGGACAGTG
CAAGTGATCTCTCTGATTCGGAAAGAATTCCCATTCCTCCTTCTCCCCTCACACCTCCAGATCTCAATCT
TCGAGCTGAAGAAATTGATCCAGTTTACTTTGATCTTCACCCTGGTCAGGGCCATACAAAACCTGAATAC
TATTATCCTAATTTCCTTCCATCCCCTTTCAGCTCCTGGGACCTACGAGATATGGCCCTGCTTCTGAACG
CAGAGAACAAAACGGAAGCCGTGCCCCGAGTGGGAGGACTTCTTGGGAAGTATATCGATAGACTTATTCA
GCTTGAGTGGCTGCAAGTCCAGACTGTACAGTGTGAAAAAGCAAAGGGGGGCAAAGCAAGGCCCCCCACT
GCCCCTGGGACCTCAGGGGCACTGAAAAGCCCTGGGAGAAGTAAGCTAATTGCTAGTGCTCTGTCCAAGC
CACTACCTCACCAGGAAGGGGCTTCAAAGTCAGGCCCTTCCCGAAAGAAAGCTTTTCACCATGAAGAAAT
CCACCCATCACATTATGCATTTGAGACTTCCCCTAGACCCATTGATGTGCTTGGTGGTACCAGGTTTTGT
TCTCAGAGGCAAACCCTTGAAATGAGGACAGAAGAAAAGAAAAAGAAATCAAGTAAGAGTACGAAGCTGC
AGCGCTGGGATCTGTCCGGCAGTGGAAGCAGCTCTAAGGTGGAAACCAGCGGTCACATTCGAGTTCCCAA
ACAGGCAGCTGTGATTCTGGACTCAGCAGATTCCTGTAAGGCCTCCAAAACACAAGCACATGCACATCCT
AGGAAAAAGGGAAAGGCAGAGAGCTGTGGTCATGCCACTGTATCGAGTGAGAAAAAACTGAAAACAAACG
GAGTAAAGCAAAACACATATAAACTAAAATAA

Translation (383 aa):
MNAGPSWNKVQHSKNSSGKRQSKSQVPHASSQPRSSLTAVTQPTEEKLKESISPEARRKRNPLGSRCQGA
SGNKLFLDFQSMKIIKENADEDSASDLSDSERIPIPPSPLTPPDLNLRAEEIDPVYFDLHPGQGHTKPEY
YYPNFLPSPFSSWDLRDMALLLNAENKTEAVPRVGGLLGKYIDRLIQLEWLQVQTVQCEKAKGGKARPPT
APGTSGALKSPGRSKLIASALSKPLPHQEGASKSGPSRKKAFHHEEIHPSHYAFETSPRPIDVLGGTRFC
SQRQTLEMRTEEKKKKSSKSTKLQRWDLSGSGSSSKVETSGHIRVPKQAAVILDSADSCKASKTQAHAHP
RKKGKAESCGHATVSSEKKLKTNGVKQNTYKLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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