CCDS Report for Consensus CDS

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Report for CCDS3112.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
3112.1	Public	Homo sapiens	3	CLSTN2	24	110	108

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3112.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000458420.7	ENSP00000402460.2	MANE Select	Accepted	alive
		NCBI	NM_022131.3	NP_071414.2	MANE Select	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_071414.2	955	Q9H4D0	955	100%	0	0

Chromosomal Locations for CCDS 3112.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)

Genome Browser links:

Chromosome	Start	Stop
3	139935375	139935483
3	140175951	140176073
3	140403629	140403824
3	140404558	140404766
3	140421125	140421274
3	140448519	140448704
3	140459521	140459769
3	140466610	140466731
3	140532324	140532486
3	140546515	140546681
3	140556513	140556661
3	140558640	140558857
3	140562138	140562308
3	140562811	140562956
3	140563080	140563203
3	140563961	140564145
3	140566053	140566253

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2868 nt):
ATGCTGCCTGGGCGGCTGTGCTGGGTGCCGCTCCTGCTGGCGCTGGGCGTGGGGAGCGGCAGCGGCGGTG GCGGGGACAGCCGGCAGCGCCGCCTCCTCGCGGCTAAAGTCAATAAGCACAAGCCATGGATCGAGACTTC ATATCATGGAGTCATAACTGAGAACAATGACACAGTCATTTTGGACCCACCACTGGTAGCCCTGGATAAA GATGCACCGGTTCCTTTTGCAGGGGAAATCTGTGCGTTCAAGATCCATGGCCAGGAGCTGCCCTTTGAGG CTGTGGTGCTCAACAAGACATCAGGAGAGGGCCGGCTCCGTGCCAAGAGCCCCATTGACTGTGAGTTGCA GAAGGAGTACACATTCATCATCCAGGCCTATGACTGTGGTGCTGGGCCCCACGAGACAGCCTGGAAAAAG TCACACAAGGCCGTGGTCCATATACAGGTGAAGGATGTCAACGAGTTTGCTCCCACCTTCAAAGAGCCAG CCTACAAGGCTGTTGTGACGGAGGGCAAGATCTATGACAGCATTCTGCAGGTGGAGGCCATTGACGAGGA CTGCTCCCCACAGTACAGCCAGATCTGCAACTATGAAATCGTCACCACAGATGTGCCTTTTGCCATCGAC AGAAATGGCAACATCAGGAACACTGAGAAGCTGAGCTATGACAAACAACACCAGTATGAGATCCTGGTGA CCGCCTACGACTGTGGACAGAAGCCCGCTGCTCAGGACACCCTGGTGCAGGTGGATGTGAAGCCAGTTTG CAAGCCTGGCTGGCAAGACTGGACCAAGAGGATTGAGTACCAGCCTGGCTCCGGGAGCATGCCCCTGTTC CCCAGCATCCACCTGGAGACGTGCGATGGAGCCGTGTCTTCCCTCCAGATCGTCACAGAGCTGCAGACTA ATTACATTGGGAAGGGTTGTGACCGGGAGACCTACTCTGAGAAATCCCTTCAAAAGTTATGTGGAGCCTC CTCTGGCATCATTGACCTCTTGCCATCCCCTAGCGCTGCCACCAACTGGACTGCAGGACTGCTGGTGGAC AGCAGTGAGATGATCTTCAAGTTTGACGGCAGGCAGGGTGCCAAAGTCCCCGATGGGATTGTGCCCAAGA ACCTGACCGATCAGTTCACCATCACCATGTGGATGAAACACGGCCCCAGCCCTGGTGTGAGAGCCGAGAA GGAAACCATCCTCTGCAACTCAGACAAAACCGAAATGAACCGGCATCACTATGCCCTGTATGTGCACAAC TGCCGCCTCGTCTTTCTCTTGCGGAAGGACTTCGACCAGGCTGACACCTTTCGCCCCGCGGAGTTCCACT GGAAGCTGGATCAGATTTGTGACAAAGAGTGGCACTACTATGTCATCAATGTGGAGTTTCCTGTGGTAAC CTTATACATGGATGGAGCAACATATGAACCATACCTGGTGACCAACGACTGGCCCATTCATCCATCTCAC ATAGCCATGCAACTCACAGTCGGCGCTTGTTGGCAAGGAGGAGAAGTCACCAAACCACAGTTTGCTCAGT TCTTTCATGGAAGCCTGGCCAGTCTCACCATCCGCCCTGGCAAAATGGAAAGCCAGAAGGTGATCTCCTG CCTGCAGGCCTGCAAGGAAGGGCTGGACATTAATTCCTTGGAAAGCCTTGGCCAAGGAATAAAGTATCAC TTCAACCCCTCGCAGTCCATCCTGGTGATGGAAGGTGACGACATTGGGAACATTAACCGTGCTCTCCAGA AAGTCTCCTACATCAACTCCAGGCAGTTCCCAACGGCGGGTGTGCGGCGCCTCAAAGTATCCTCCAAAGT CCAGTGCTTTGGGGAAGACGTATGCATCAGTATCCCTGAGGTAGATGCCTATGTGATGGTCCTCCAGGCC ATCGAGCCCCGGATCACCCTCCGGGGCACAGACCACTTCTGGAGACCTGCTGCCCAGTTTGAAAGTGCCA GGGGAGTGACCCTCTTCCCTGATATCAAGATTGTGAGCACCTTCGCCAAAACCGAAGCCCCCGGGGACGT GAAAACCACAGACCCCAAATCAGAAGTCTTAGAGGAAATGCTTCATAACTTAGATTTCTGTGACATTTTG GTGATCGGAGGGGACTTGGACCCAAGGCAGGAGTGCTTGGAGCTCAACCACAGTGAGCTCCACCAACGAC ACCTGGATGCCACTAATTCTACTGCAGGCTACTCCATCTACGGTGTGGGCTCCATGAGCCGCTATGAGCA GGTGCTACATCACATCCGCTACCGCAACTGGCGTCCGGCTTCCCTTGAGGCCCGGCGTTTCCGGATTAAG TGCTCAGAACTCAATGGGCGCTACACTAGCAATGAGTTCAACTTGGAGGTCAGCATCCTTCATGAAGACC AAGTCTCAGATAAGGAGCATGTCAATCATCTGATTGTGCAGCCTCCCTTCCTCCAGTCTGTCCATCATCC TGAGTCCCGGAGTAGCATCCAGCACAGTTCAGTGGTCCCAAGCATTGCCACAGTGGTCATCATCATCTCC GTGTGCATGCTTGTGTTTGTCGTGGCCATGGGTGTGTACCGGGTCCGGATCGCCCACCAGCACTTCATCC AGGAGACTGAGGCTGCCAAGGAATCTGAGATGGACTGGGACGATTCTGCGCTGACTATCACAGTCAACCC CATGGAGAAACATGAAGGACCAGGGCATGGGGAAGATGAGACTGAGGGAGAAGAGGAGGAAGAAGCCGAG GAAGAAATGAGCTCCAGCAGTGGCTCTGACGACAGCGAAGAGGAGGAGGAGGAGGAAGGGATGGGCAGAG GCAGACATGGGCAGAATGGAGCCAGGCAAGCCCAGCTGGAGTGGGATGACTCCACCCTCCCCTACTAG
Translation (955 aa):
MLPGRLCWVPLLLALGVGSGSGGGGDSRQRRLLAAKVNKHKPWIETSYHGVITENNDTVILDPPLVALDK DAPVPFAGEICAFKIHGQELPFEAVVLNKTSGEGRLRAKSPIDCELQKEYTFIIQAYDCGAGPHETAWKK SHKAVVHIQVKDVNEFAPTFKEPAYKAVVTEGKIYDSILQVEAIDEDCSPQYSQICNYEIVTTDVPFAID RNGNIRNTEKLSYDKQHQYEILVTAYDCGQKPAAQDTLVQVDVKPVCKPGWQDWTKRIEYQPGSGSMPLF PSIHLETCDGAVSSLQIVTELQTNYIGKGCDRETYSEKSLQKLCGASSGIIDLLPSPSAATNWTAGLLVD SSEMIFKFDGRQGAKVPDGIVPKNLTDQFTITMWMKHGPSPGVRAEKETILCNSDKTEMNRHHYALYVHN CRLVFLLRKDFDQADTFRPAEFHWKLDQICDKEWHYYVINVEFPVVTLYMDGATYEPYLVTNDWPIHPSH IAMQLTVGACWQGGEVTKPQFAQFFHGSLASLTIRPGKMESQKVISCLQACKEGLDINSLESLGQGIKYH FNPSQSILVMEGDDIGNINRALQKVSYINSRQFPTAGVRRLKVSSKVQCFGEDVCISIPEVDAYVMVLQA IEPRITLRGTDHFWRPAAQFESARGVTLFPDIKIVSTFAKTEAPGDVKTTDPKSEVLEEMLHNLDFCDIL VIGGDLDPRQECLELNHSELHQRHLDATNSTAGYSIYGVGSMSRYEQVLHHIRYRNWRPASLEARRFRIK CSELNGRYTSNEFNLEVSILHEDQVSDKEHVNHLIVQPPFLQSVHHPESRSSIQHSSVVPSIATVVIIIS VCMLVFVVAMGVYRVRIAHQHFIQETEAAKESEMDWDDSALTITVNPMEKHEGPGHGEDETEGEEEEEAE EEMSSSSGSDDSEEEEEEEGMGRGRHGQNGARQAQLEWDDSTLPY

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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