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Report for CCDS40733.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40733.1 Public Mus musculus 9 Clstn2 23 108 98 CCDS HistoryNCBI Gene:64085Re-query CCDS DB by CCDS ID:40733.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40733.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035027.12 ENSMUSP00000035027.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035027.12Link to Ensembl Protein Viewer:ENSMUSP00000035027.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000035027Re-query CCDS DB by Protein ID:ENSMUSP00000035027
Original member NCBI NM_022319.2 NP_071714.2 Updated not alive Link to Nucleotide Sequence:NM_022319.2Link to Protein Sequence:NP_071714.2Re-query CCDS DB by Nucleotide ID:NM_022319Re-query CCDS DB by Protein ID:NP_071714
Current member NCBI NM_022319.3 NP_071714.2 Accepted alive Link to Nucleotide Sequence:NM_022319.3Link to Protein Sequence:NP_071714.2Re-query CCDS DB by Nucleotide ID:NM_022319Re-query CCDS DB by Protein ID:NP_071714Link to BLAST:NP_071714.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071714.2 966 Q9ER65-1 966 100% 0 0

Chromosomal Locations for CCDS 40733.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 97445653 97445713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97454583 97454743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97456426 97456610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97457313 97457436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97457547 97457692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97458094 97458264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97461340 97461563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97463465 97463613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97469691 97469857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97482939 97483101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97526304 97526425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97532612 97532860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97541732 97541917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97570560 97570709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97582458 97582666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97583503 97583698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97799348 97799470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98032861 98032975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2901 nt):
ATGCTGCCGGGGAGGCTGTGCTTGGTGCCGCTCCTGCTGGCGCTGGGCGTAGGGAGCGGCGGCGGCAGTG
GAGACGGCGGAGACAGCCGGCGGCGCCGCCTCCTCGTGGCGAAAGTCAATAAACACAAGCCATGGATCGA
GACATCGTATCACGGAGTCATAACTGAGAACAATGACACAGTCATCTTGGACCCTCCACTGGTTGCCCTG
GATAAAGATGCCCCAGTGCCTTTTGCAGGGGAAATCTGTGCATTCAAGATCCATGGACAGGAGCTGCCCT
TTGAGGCTGTGGTGCTCAATAAGACATCTGGAGAGGGCCGGCTCCGCGCCAAGAGTCCCATCGACTGTGA
GCTGCAGAAGGAGTACACGTTCATCATCCAGGCCTATGACTGTGGTGCGGGGCCTCGGGAAGCAGCCTGG
AAGAAGTCACACAAGGCTGTGGTCCACATCCAGGTGAAGGATGTCAATGAGTTTGCACCCACCTTCAAAG
AGCCAGCCTACAAGGCCATCGTCACGGAGGGCAAGATCTATGACAGCATCCTGCAGGTAGAAGCCATTGA
TGAGGACTGCTCCCCGCAGTACAGCCAGATTTGCAACTATGAAATTGTCACAACGGATGTGCCTTTTGCC
ATTGACAGAAATGGCAACATCAGGAACACTGAGAAGCTGAGCTATGACAAGCAACACCAGTATGAGATCC
TGGTAACCGCTTATGACTGTGGACAGAAACCCGCCGCTCAGGACACCCTGGTGCAGGTGGACGTGAAACC
AGTGTGCAAGCCCGGCTGGCAAGATTGGACCAAAAGGATTGAGTACCAGCCTGGCTCGGGGAGTATGCCC
TTGTTCCCCAGCATCCACCTGGAGACATGCGATGGAGCTGTGTCCTCCCTCCAGGTCACTGCGGAGCTGC
AGACTAATTACATCGGCAAGGGCTGTGACCGAGAGACCTACTCTGAGAAATCCCTTCAGAAATTATGTGG
CGCATCCTCGGGTATCATCGATCTCTTGCCGTCCCCTAGCGCAGCTACCAACTGGACTGCGGGGCTGCTG
GTGGACAGCAGTGAGATGATCTTCAAGTTTGACGGCAGGCAGGGTGCCAAGATCCCTGATGGGATCGTGC
CCAAGAACCTGACGGACCAGTTCACCATCACCATGTGGATGAAACATGGCCCCAGCCCCGGCGTGAGAGC
CGAGAAGGAAACTATCCTCTGTAACTCAGATAAAACTGAAATGAACCGGCATCACTATGCCCTGTATGTG
CACAACTGCCGCCTCGTCTTCCTCCTGCGGAAGGACTTTGACCAGGCAGACACCTTTCGCCCTGCAGAGT
TTCACTGGAAGCTGGACCAGATTTGTGACAAAGAGTGGCATTACTATGTCATCAATGTGGAGTTCCCTGT
GGTTACCCTGTACATGGATGGAGCAACATATGAACCATACCTGGTGACTAATGACTGGCCCATTCATCCA
TCTCACATAGCCATGCAACTTACTGTCGGCGCCTGTTGGCAAGGAGGCGAAGTGGCCAAACCACGGTTTG
CACAATTTTTCCATGGCAGCCTTGCCAGTCTCACAATCCGTCCTGGCAAAATGGAAAGCCAGAAGGTGAT
TTCTTGTTTGCAGGCCTGCAAAGAAGGGCTGGATATTAATTCCTTGGAAAGCCTTGGGCGAGGGATAAAG
TATCACTTCAACCCTTCACAGTCCATCCTCGTGATGGAAGGCGATGACATTGGGAACATCAACCGAGCCC
TCCAGAAAGTCTCCTATATCAACTCCCGGCAATTCCCAACAGCAGGGGTCCGGCGCCTCAGACTCTCTTC
CAAAGTCCAGTGCTTTGGAGAAGATGTGTGCATCAGCATCCCAGATGTGGATGCCTACATCATGGTCTTA
CAGGCCATTGAGCCCCAGATCACCCTCCAGGGAACAGAGCGTTTCTGGAGACCTGCTGCCCAGTTTGAAA
GTGCCAGAGGAGTGACTCTCTTCCCTGACATCAAGATTGTGAGCACCTTTGCCAAGACTGAGGCCTCCGG
GGACATGAGAGCCACAGGTACAGCCCCCAAATCAGCAGTCTTGGAAGAAATGCTACACAATTTGGATTTC
TGTGACATTTTGGTGCTTGGAGGGGACTTGGATCCAAGGCAAGAGTGCTTGGAGCTCAACCACAGTGAGC
TCCACCAACGACACCTTGATGCCACCAACTCAACTGCTGGCTACTCCATCTATGGTGTGGGCTCCATGAA
CCGCTATGAGCAGGTGCTGCATCACCTCCGTTACCGCAACTGGCACCCCACGTCCCTTGAGACCCGGAGG
TTCCGGATCAAGTGCTCAGAACTCAACGGGCGTTACACTAGCAATGAGTTCAACTTGGAGGTCAGTGTCC
TCCATGAAGTGAGAGTCTCTGACAAGGAACATGTCAACCACCTTATTGTGCAGCCACCCTTTCTCCAGTC
TGTCCATCACCCTGAGACCCGGAGTAGTATCCAGCGCAGTTCAGTGGTCCCGAGCATCGCCACTGTCGTC
ATCATTATCTCTGTGTGCATGCTAGTGTTTGTTGTGGCCATGGGTGTGTACCGAGTCCGAATTGCCCACC
AGCATTTTATCCAAGAGACTGAGGCTGCCAAGGAAGCTGAGATGGACTGGGATGACTCTGCACTGACTAT
CACTGTCAACCCTATGGAGAAACATGAAGGCCCAGGGAACGGGGAAGATGAAACCACCGAAGTAGAGGAA
GAGGAGGAAGCAGAGGAAGGCTCGAGCTCCAGCAGCAGTGGTTCCGATGACAGCGAAGAGGAAGAAGAGG
AAGGGATGGGCAGAGTCAGACATGGGCAGAGCGGCACCAGCTCTCAAAGCCCTGAAAGAAGTACCTGGAA
CACTGCAGGAGTCATAAACATTTGGAAGTGA

Translation (966 aa):
MLPGRLCLVPLLLALGVGSGGGSGDGGDSRRRRLLVAKVNKHKPWIETSYHGVITENNDTVILDPPLVAL
DKDAPVPFAGEICAFKIHGQELPFEAVVLNKTSGEGRLRAKSPIDCELQKEYTFIIQAYDCGAGPREAAW
KKSHKAVVHIQVKDVNEFAPTFKEPAYKAIVTEGKIYDSILQVEAIDEDCSPQYSQICNYEIVTTDVPFA
IDRNGNIRNTEKLSYDKQHQYEILVTAYDCGQKPAAQDTLVQVDVKPVCKPGWQDWTKRIEYQPGSGSMP
LFPSIHLETCDGAVSSLQVTAELQTNYIGKGCDRETYSEKSLQKLCGASSGIIDLLPSPSAATNWTAGLL
VDSSEMIFKFDGRQGAKIPDGIVPKNLTDQFTITMWMKHGPSPGVRAEKETILCNSDKTEMNRHHYALYV
HNCRLVFLLRKDFDQADTFRPAEFHWKLDQICDKEWHYYVINVEFPVVTLYMDGATYEPYLVTNDWPIHP
SHIAMQLTVGACWQGGEVAKPRFAQFFHGSLASLTIRPGKMESQKVISCLQACKEGLDINSLESLGRGIK
YHFNPSQSILVMEGDDIGNINRALQKVSYINSRQFPTAGVRRLRLSSKVQCFGEDVCISIPDVDAYIMVL
QAIEPQITLQGTERFWRPAAQFESARGVTLFPDIKIVSTFAKTEASGDMRATGTAPKSAVLEEMLHNLDF
CDILVLGGDLDPRQECLELNHSELHQRHLDATNSTAGYSIYGVGSMNRYEQVLHHLRYRNWHPTSLETRR
FRIKCSELNGRYTSNEFNLEVSVLHEVRVSDKEHVNHLIVQPPFLQSVHHPETRSSIQRSSVVPSIATVV
IIISVCMLVFVVAMGVYRVRIAHQHFIQETEAAKEAEMDWDDSALTITVNPMEKHEGPGNGEDETTEVEE
EEEAEEGSSSSSSGSDDSEEEEEEGMGRVRHGQSGTSSQSPERSTWNTAGVINIWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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