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Report for CCDS57964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57964.1 Public Homo sapiens 1 TMEM88B 24 110 108 CCDS HistoryNCBI Gene:643965Re-query CCDS DB by CCDS ID:57964.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57964.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378821.4 ENSP00000455099.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378821.4Link to Ensembl Protein Viewer:ENSP00000455099.1Re-query CCDS DB by Nucleotide ID:ENST00000378821Re-query CCDS DB by Protein ID:ENSP00000455099
Original member Current member NCBI NM_001146685.2 NP_001140157.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001146685.2Link to Protein Sequence:NP_001140157.1Re-query CCDS DB by Nucleotide ID:NM_001146685Re-query CCDS DB by Protein ID:NP_001140157Link to BLAST:NP_001140157.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001140157.1 163 A6NKF7 163 100% 0 0

Chromosomal Locations for CCDS 57964.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 1426128 1426385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1427554 1427787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGAGTGAGCAGGGGAGGGAGACGGAGGAGGAGGAGGGGGGAGGTGGTGCTTCCGACACAGCGCCCATGC
TGCCCCGGGGACCTCCCGACCACCAGGCCTCAGCCCTGACGTGCCCAGGGTGGTCGGGGCCCCCGCTGCT
GCCCGGCCGGCTGCTGGCCGGGCTCCTGCTGCACCTCCTGCTGCCCGCCGCAGCCTTCCTGCTGGTGCTC
CTGCCCGCGGCCGCCGTCGTCTACCTGGGATTCCTGTGCCACTCGAGGGTCCACCCCGCTCCGGGTCCCC
GGTGCCGCGCGCTGTTCTCAGACCGCGGCTCCGCGGCGCTCATCGTGTTCGGGCTTCTCTCGCTGCCGCC
GCTGCTGGTGCTCGCCTCGGCCGTCCGCGCCCGCCTAGCCCGGCGCCTCCGCCCGCTGCTGCCTCCGCCC
GCTGGGACCCCCGGACCCCGCCGCCCCCCGGGGCGCCCCGACGAGGACGAGCAACTCTGCGCCTGGGTGT
GA

Translation (163 aa):
MSEQGRETEEEEGGGGASDTAPMLPRGPPDHQASALTCPGWSGPPLLPGRLLAGLLLHLLLPAAAFLLVL
LPAAAVVYLGFLCHSRVHPAPGPRCRALFSDRGSAALIVFGLLSLPPLLVLASAVRARLARRLRPLLPPP
AGTPGPRRPPGRPDEDEQLCAWV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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