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Report for CCDS13395.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13395.1 Public Homo sapiens 20 CDH22 24 110 108 CCDS HistoryNCBI Gene:64405Re-query CCDS DB by CCDS ID:13395.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13395.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537909.4 ENSP00000437790.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000537909.4Link to Ensembl Protein Viewer:ENSP00000437790.1Re-query CCDS DB by Nucleotide ID:ENST00000537909Re-query CCDS DB by Protein ID:ENSP00000437790
Original member Current member NCBI NM_021248.3 NP_067071.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021248.3Link to Protein Sequence:NP_067071.1Re-query CCDS DB by Nucleotide ID:NM_021248Re-query CCDS DB by Protein ID:NP_067071Link to BLAST:NP_067071.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067071.1 828 Q9UJ99 828 100% 0 0

Chromosomal Locations for CCDS 13395.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 46174506 46175077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46177946 46178197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46186588 46186705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46186826 46186947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46199423 46199559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46210307 46210560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46212995 46213188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46216826 46216993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46227508 46227627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46240963 46241257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46251040 46251294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2487 nt):
ATGAGGCCGAGGCCCGAAGGTAGGGGGCTCCGGGCGGGAGTCGCGCTGTCCCCCGCGCTACTGCTGCTGC
TGCTGCTGCCGCCGCCGCCGACGCTGCTGGGGCGCCTGTGGGCAGCGGGCACACCCTCGCCGTCGGCGCC
CGGAGCTCGGCAGGACGGCGCGCTGGGAGCCGGCCGCGTCAAACGCGGCTGGGTGTGGAACCAGTTCTTC
GTGGTAGAGGAGTACACGGGCACGGAGCCCCTGTATGTGGGCAAGATCCACTCCGACTCAGACGAGGGTG
ACGGGGCCATCAAGTACACCATCTCAGGCGAGGGTGCTGGGACCATCTTCCTGATCGACGAGCTGACAGG
CGACATTCATGCCATGGAGCGCCTGGACCGCGAGCAGAAAACCTTCTACACGCTGCGGGCCCAGGCTCGG
GATCGCGCCACCAACCGCCTACTGGAGCCCGAGTCGGAGTTCATCATCAAGGTGCAGGACATCAATGACA
GTGAGCCCCGCTTCCTGCACGGCCCCTATATTGGCAGCGTGGCCGAGCTCTCACCTACAGGCACGTCGGT
GATGCAGGTGATGGCCTCGGATGCGGATGACCCCACGTACGGCAGCAGCGCTCGGCTGGTGTACAGCGTG
CTGGACGGCGAGCACCACTTCACCGTGGACCCCAAGACCGGCGTAATCCGGACGGCTGTGCCTGACCTTG
ACCGCGAGAGCCAGGAGCGCTACGAGGTGGTGATCCAGGCCACAGACATGGCGGGTCAGCTGGGTGGCCT
CTCGGGCTCCACTACCGTCACCATCGTAGTCACCGACGTCAATGACAACCCGCCCCGTTTCCCGCAGAAG
ATGTACCAGTTCAGCATCCAGGAGTCAGCCCCCATTGGAACGGCTGTGGGACGTGTGAAGGCTGAGGACT
CAGACGTGGGAGAGAACACAGACATGACTTACCACCTTAAGGACGAGAGCAGCAGCGGCGGCGATGTGTT
CAAGGTCACCACAGACAGCGACACTCAGGAGGCCATCATCGTAGTGCAGAAGCGCCTGGACTTCGAATCC
CAGCCCGTGCACACCGTGATCCTGGAGGCCCTCAACAAGTTCGTGGACCCCCGCTTCGCCGACCTGGGCA
CGTTCCGCGACCAGGCGATCGTGCGCGTGGCCGTGACCGACGTGGACGAGCCCCCCGAGTTCCGGCCGCC
CTCCGGCCTCCTGGAGGTGCAGGAGGACGCGCAGGTGGGCTCCCTGGTCGGCGTGGTGACGGCGCGGGAC
CCCGACGCCGCCAACCGGCCCGTCCGGTACGCCATTGACCGCGAATCAGATTTGGACCAGATCTTCGATA
TCGATGCGGACACAGGCGCCATCGTGACTGGCAAGGGGCTGGACCGCGAGACGGCCGGCTGGCACAACAT
CACAGTGCTGGCCATGGAGGCGGACAATCATGCACAGCTATCCCGGGCATCCCTAAGGATCCGAATCCTG
GATGTGAACGACAATCCCCCAGAACTGGCCACACCCTACGAGGCAGCTGTATGCGAGGATGCCAAGCCAG
GCCAGCTCATCCAGACCATCAGCGTGGTGGACAGAGACGAGCCCCAAGGCGGGCACCGCTTCTATTTCCG
CCTGGTGCCTGAAGCTCCCAGCAACCCTCATTTCTCTCTGCTTGACATCCAAGACAACACCGCTGCAGTG
CACACGCAGCACGTGGGCTTCAACCGGCAGGAGCAGGACGTGTTCTTCCTGCCCATCCTGGTGGTAGACA
GTGGGCCGCCCACACTGAGCAGCACAGGCACGCTCACCATCCGCATCTGTGGCTGCGACAGCTCCGGCAC
CATCCAGTCCTGCAACACCACGGCCTTTGTCATGGCCGCCTCCCTCAGCCCCGGCGCCCTCATCGCCCTC
TTGGTCTGCGTTCTCATCCTGGTTGTGCTGGTGCTGCTGATCCTCACCCTCAGGCGCCACCACAAGAGCC
ACCTGAGCTCGGACGAGGATGAAGACATGCGGGACAACGTCATCAAATACAACGACGAAGGCGGCGGCGA
GCAGGACACCGAAGCCTACGACATGTCGGCGCTGCGGAGCCTCTACGACTTCGGCGAGCTCAAGGGCGGC
GACGGGGGCGGCAGCGCGGGCGGGGGAGCGGGCGGGGGCTCGGGCGGGGGCGCGGGCAGCCCCCCGCAGG
CCCACCTGCCCTCCGAGCGCCACTCGCTGCCGCAGGGGCCGCCGAGCCCCGAGCCAGACTTCTCAGTGTT
CAGGGACTTCATCAGCCGCAAGGTGGCACTGGCGGACGGGGACCTGTCGGTGCCGCCCTACGACGCCTTC
CAGACCTACGCCTTCGAGGGCGCGGACTCGCCGGCCGCCTCGCTCAGCTCCCTGCACAGCGGCTCGTCGG
GCTCCGAGCAGGACTTCGCCTATCTCAGCAGCTGGGGTCCGCGCTTCCGGCCCCTGGCCGCGCTCTACGC
CGGCCACCGCGGGGACGACGAGGCCCAGGCCTCCTAG

Translation (828 aa):
MRPRPEGRGLRAGVALSPALLLLLLLPPPPTLLGRLWAAGTPSPSAPGARQDGALGAGRVKRGWVWNQFF
VVEEYTGTEPLYVGKIHSDSDEGDGAIKYTISGEGAGTIFLIDELTGDIHAMERLDREQKTFYTLRAQAR
DRATNRLLEPESEFIIKVQDINDSEPRFLHGPYIGSVAELSPTGTSVMQVMASDADDPTYGSSARLVYSV
LDGEHHFTVDPKTGVIRTAVPDLDRESQERYEVVIQATDMAGQLGGLSGSTTVTIVVTDVNDNPPRFPQK
MYQFSIQESAPIGTAVGRVKAEDSDVGENTDMTYHLKDESSSGGDVFKVTTDSDTQEAIIVVQKRLDFES
QPVHTVILEALNKFVDPRFADLGTFRDQAIVRVAVTDVDEPPEFRPPSGLLEVQEDAQVGSLVGVVTARD
PDAANRPVRYAIDRESDLDQIFDIDADTGAIVTGKGLDRETAGWHNITVLAMEADNHAQLSRASLRIRIL
DVNDNPPELATPYEAAVCEDAKPGQLIQTISVVDRDEPQGGHRFYFRLVPEAPSNPHFSLLDIQDNTAAV
HTQHVGFNRQEQDVFFLPILVVDSGPPTLSSTGTLTIRICGCDSSGTIQSCNTTAFVMAASLSPGALIAL
LVCVLILVVLVLLILTLRRHHKSHLSSDEDEDMRDNVIKYNDEGGGEQDTEAYDMSALRSLYDFGELKGG
DGGGSAGGGAGGGSGGGAGSPPQAHLPSERHSLPQGPPSPEPDFSVFRDFISRKVALADGDLSVPPYDAF
QTYAFEGADSPAASLSSLHSGSSGSEQDFAYLSSWGPRFRPLAALYAGHRGDDEAQAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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