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Report for CCDS3583.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3583.2 Public Homo sapiens 4 MRPL1 24 110 108 CCDS HistoryNCBI Gene:65008Re-query CCDS DB by CCDS ID:3583.2See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3583.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315567.13 ENSP00000315017.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315567.13Link to Ensembl Protein Viewer:ENSP00000315017.8Re-query CCDS DB by Nucleotide ID:ENST00000315567Re-query CCDS DB by Protein ID:ENSP00000315017
Original member Current member NCBI NM_020236.4 NP_064621.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020236.4Link to Protein Sequence:NP_064621.3Re-query CCDS DB by Nucleotide ID:NM_020236Re-query CCDS DB by Protein ID:NP_064621Link to BLAST:NP_064621.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064621.3 325 Q9BYD6 325 100% 0 0

Chromosomal Locations for CCDS 3583.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 77862849 77862879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77871744 77871855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77883242 77883500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77885256 77885339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77887220 77887291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77894139 77894250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77909266 77909372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77949797 77949878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77952489 77952607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGGCGGCGGCCGTAAGGTGCATGGGTAGAGCCTTGATACATCATCAAAGGCATAGCCTTTCCAAGATGG
TTTATCAGACATCACTTTGTTCTTGTTCTGTAAACATCCGAGTGCCCAACAGACATTTTGCTGCTGCTAC
AAAGTCTGCAAAGAAAACAAAAAAAGGTGCTAAAGAAAAAACACCAGATGAGAAAAAAGATGAAATAGAA
AAAATAAAAGCATATCCCTATATGGAAGGCGAACCTGAGGATGATGTCTATTTAAAACGCTTATACCCGA
GACAGATATATGAGGTGGAGAAAGCTGTTCACTTACTTAAGAAATTTCAAATTCTTGACTTTACTAGTCC
AAAGCAAAGTGTTTATCTTGATTTGACACTGGATATGGCACTGGGAAAGAAGAAAAACGTGGAGCCATTT
ACCAGTGTTCTTAGTTTGCCATACCCATTTGCTTCCGAAATCAATAAAGTTGCTGTATTTACAGAGAATG
CATCAGAGGTCAAAATAGCGGAAGAAAATGGAGCTGCATTTGCAGGAGGCACTAGTCTGATACAGAAGAT
TTGGGATGATGAAATTGTTGCAGACTTTTACGTAGCTGTTCCAGAAATAATGCCTGAACTTAATCGATTA
AGGAAGAAACTGAATAAAAAATATCCAAAGCTTTCTCGAAATTCCATTGGCCGTGACATCCCCAAAATGC
TTGAATTATTTAAAAATGGACATGAAATTAAGGTAGATGAAGAAAGGGAGAACTTTCTCCAGACCAAAAT
AGCAACATTGGATATGTCAAGTGACCAGATAGCTGCCAATCTGCAAGCAGTTATTAATGAAGTTTGTAGG
CACAGACCGCTGAATTTGGGTCCCTTTGTGGTACGTGCTTTCCTTCGTAGTTCAACAAGTGAAGGTTTAT
TACTGAAGATTGATCCATTGTTGCCTAAAGAAGTAAAAAATGAAGAAAGTGAAAAAGAAGATGCCTAA

Translation (325 aa):
MAAAVRCMGRALIHHQRHSLSKMVYQTSLCSCSVNIRVPNRHFAAATKSAKKTKKGAKEKTPDEKKDEIE
KIKAYPYMEGEPEDDVYLKRLYPRQIYEVEKAVHLLKKFQILDFTSPKQSVYLDLTLDMALGKKKNVEPF
TSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDEIVADFYVAVPEIMPELNRL
RKKLNKKYPKLSRNSIGRDIPKMLELFKNGHEIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVCR
HRPLNLGPFVVRAFLRSSTSEGLLLKIDPLLPKEVKNEESEKEDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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