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Report for CCDS19901.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19901.1 Public Mus musculus 6 Asb4 23 108 98 CCDS HistoryNCBI Gene:65255Re-query CCDS DB by CCDS ID:19901.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19901.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043294.11 ENSMUSP00000040331.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043294.11Link to Ensembl Protein Viewer:ENSMUSP00000040331.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000043294Re-query CCDS DB by Protein ID:ENSMUSP00000040331
Original member Current member NCBI NM_001355662.1 NP_001342591.1 Accepted alive Link to Nucleotide Sequence:NM_001355662.1Link to Protein Sequence:NP_001342591.1Re-query CCDS DB by Nucleotide ID:NM_001355662Re-query CCDS DB by Protein ID:NP_001342591Link to BLAST:NP_001342591.1
Original member Current member NCBI NM_023048.5 NP_075535.1 Accepted alive Link to Nucleotide Sequence:NM_023048.5Link to Protein Sequence:NP_075535.1Re-query CCDS DB by Nucleotide ID:NM_023048Re-query CCDS DB by Protein ID:NP_075535Link to BLAST:NP_075535.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342591.1 426 Q9WV71 426 100% 0 0
NP_075535.1 426 Q9WV71 426 100% 0 0

Chromosomal Locations for CCDS 19901.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 5390609 5390795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5398224 5398523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5423342 5423832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5429740 5429853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5430859 5431047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGGACGGCATCACTGCCCCTATCAGCAAAGCTGGAGCTGCCAAATTAGTTAAGAAAGATTTCCTGGAGG
CTCTAAAAACAAATGACTTCGGAAAACTGAAGGCTATTTTAATCGAGAGGCAAATAGATGTGGACACAGT
GTTTGAAGTTGAAGATGAGAACATGATTTTGGCATCTTACAAACAAGGCTATTGGTTGCCCAGTTATAAG
CTGAAGTCTTCCTGGGCCACAGGCCTGCATCTGTCAGTTTTGCTTGGTCATGTGGAGTGCCTGATGGTAC
TGCTGGACCACAATGCTACCATCAACTGTCGTCCCAACGGGAAGACCCCTCTGCACGTGGCTTGTGAAAT
CGCCAACCTCGAGTGCGTGAAGATTCTCTGTGACCGTGGCGCAAAGCTCAACTGCTACTCCCTGAGTGGG
CACACTGCTTTGCACTTCTGCACCACACCGAGCTCCATCCTCTGTGCCAAGCAGTTGGTGTTGAGAGGTG
CAAACGTAAACATGAAAACCAACAACCAGGATGAAGAGACACCCCTGCACACGGCGGCCCACTTCGGCCT
CTCTGAGCTGGTTGCCTTCTACGTGGAGAACGGGGCCATCGTGGATAGCATGAACGCCCACATGGAGACC
CCACTGGCCATTGCCACCTACTGGGCCCTGCGCTTCAAGGAGCAGGAGTACAGCAGGGAACACCACCTCA
TCTGCCGCACCCTGCTGGACAACAACGCCGAGGTCAACGCTCGTGATGATGATTTCAAGTCCCCTCTACA
CAAGGCTGCCTGGAATTGCGACCACGTGCTCATGCACATGATGCTGGAGGCAGGAGCTGAGGCCAACCTC
ATGGATATCAATGGCTGTGCCGCTATCCAGTACGTGCTGAAGGTCACCTCCGTGCGTCCTGCTGCACAGC
CTGAGATCTGCTACCAGCTGCTGCTGAACCACGGGGCTGCGCGCATCTACCCCCCACAGTTCCACAAGGT
GATCCAGGCTTGCCACTCTTGCCCGAAAGCCATTGAAGTTGTGGTCAATGCCTATGAACACATTCGATGG
AACATAAAGTGGAGACGAGCCATTCCTGATGATGACTTGGAGAAACACTGGGATTTTTACCACTCTCTCT
TCAAGGTGTGCTGCAACACCCCCAGAACCCTCATGCACCTGTCAAGATGTGCCATTCGAAAAGCGCTACA
CAACAGATGCCACAAAGCAATCCCTATGCTGTCCCTCCCACTGCCGTTGAAGAAGTACCTGCTTTTGGAG
CCAGAGGGAATCATTTACTAA

Translation (426 aa):
MDGITAPISKAGAAKLVKKDFLEALKTNDFGKLKAILIERQIDVDTVFEVEDENMILASYKQGYWLPSYK
LKSSWATGLHLSVLLGHVECLMVLLDHNATINCRPNGKTPLHVACEIANLECVKILCDRGAKLNCYSLSG
HTALHFCTTPSSILCAKQLVLRGANVNMKTNNQDEETPLHTAAHFGLSELVAFYVENGAIVDSMNAHMET
PLAIATYWALRFKEQEYSREHHLICRTLLDNNAEVNARDDDFKSPLHKAAWNCDHVLMHMMLEAGAEANL
MDINGCAAIQYVLKVTSVRPAAQPEICYQLLLNHGAARIYPPQFHKVIQACHSCPKAIEVVVNAYEHIRW
NIKWRRAIPDDDLEKHWDFYHSLFKVCCNTPRTLMHLSRCAIRKALHNRCHKAIPMLSLPLPLKKYLLLE
PEGIIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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