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Report for CCDS21255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21255.1 Public Mus musculus 7 Izumo1 23 108 98 CCDS HistoryNCBI Gene:73456Re-query CCDS DB by CCDS ID:21255.1Re-query CCDS DB by GeneID:73456See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21255.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033100.4 ENSMUSP00000033100.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033100.4Link to Ensembl Protein Viewer:ENSMUSP00000033100.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033100Re-query CCDS DB by Protein ID:ENSMUSP00000033100
Original member NCBI NM_001018013.1 NP_001018013.1 Updated not alive Link to Nucleotide Sequence:NM_001018013.1Link to Protein Sequence:NP_001018013.1Re-query CCDS DB by Nucleotide ID:NM_001018013Re-query CCDS DB by Protein ID:NP_001018013
Current member NCBI NM_001018013.2 NP_001018013.1 Accepted alive Link to Nucleotide Sequence:NM_001018013.2Link to Protein Sequence:NP_001018013.1Re-query CCDS DB by Nucleotide ID:NM_001018013Re-query CCDS DB by Protein ID:NP_001018013Link to BLAST:NP_001018013.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001018013.1 397 Q9D9J7 397 100% 0 0

Chromosomal Locations for CCDS 21255.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45622797 45623031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45623294 45623368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45624135 45624221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45624662 45624682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45624929 45625009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45625122 45625222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45625542 45625695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45626023 45626281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45627028 45627208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGGGGCCGCATTTTACACTCTTGCTGGCAGCTCTTGCCAACTGCCTGTGTCCAGGGAGGCCCTGCATCA
AATGTGACCAGTTTGTGACAGATGCGCTAAAGACTTTCGAAAACACTTACCTGAATGACCACCTGCCACA
CGACATTCACAAAAATGTAATGAGGATGGTGAACCATGAAGTATCGAGCTTCGGCGTAGTCACTTCGGCT
GAGGATTCCTATTTGGGGGCCGTGGACGAGAACACACTGGAACAAGCAACCTGGAGTTTTCTGAAGGATC
TGAAGCGTATTACAGACAGTGACTTAAAAGGAGAGCTCTTTATAAAGGAACTATTGTGGATGCTTCGTCA
TCAAAAGGACATCTTTAACAATCTTGCTAGACAGTTCCAAAAGGAAGTTCTTTGTCCCAACAAATGCGGA
GTGATGTCGCAGACTTTGATCTGGTGTCTTAAGTGCGAAAAGCAGTTGCACATTTGTCGGAAATCCCTAG
ATTGTGGAGAGCGCCACATAGAGGTACATCGCTCGGAAGACCTGGTCCTGGACTGTCTGCTCAGTTGGCA
TCGTGCTTCTAAGGGACTTACAGATTACAGTTTTTACAGGGTTTGGGAGAACAGTTCTGAGACCTTGATT
GCCAAGGGGAAAGAACCATATCTGACCAAGTCGATGGTGGGTCCAGAGGATGCTGGCAACTACCGCTGTG
TGCTAGATACCATCAACCAAGGTCATGCCACCGTCATCCGCTACGATGTCACAGTATTGCCCCCAAAGCA
TTCAGAGGAAAACCAACCACCGAACATCATAACCCAAGAGGAGCACGAGACTCCTGTCCACGTGACTCCA
CAGACACCACCGGGGCAGGAGCCAGAGTCGGAGCTGTACCCGGAGCTGCACCCAGAGTTGTACCCGGAGC
TCATACCTACAGTCGCTCAAAATCCAGAGAAAAAAATGAAAACTCGCCTCTTAATACTGTTGACCCTTGG
CTTTGTGGTTCTTGTGGCCAGCATCATTATCTCGGTACTTCACTTTAGGAAAGTCAGCGCTAAATTGAAG
AATGCAAGTGACGAAGTCAAACCCACCGCGTCAGGATCCAAGTCAGATCAGAGTTTGTCCCAACAGATGG
GATTGAAGAAGGCCTCTCAGGCAGATTTTAACTCTGACTACTCTGGAGATAAGAGCGAGGCAACAGAAAA
CTAA

Translation (397 aa):
MGPHFTLLLAALANCLCPGRPCIKCDQFVTDALKTFENTYLNDHLPHDIHKNVMRMVNHEVSSFGVVTSA
EDSYLGAVDENTLEQATWSFLKDLKRITDSDLKGELFIKELLWMLRHQKDIFNNLARQFQKEVLCPNKCG
VMSQTLIWCLKCEKQLHICRKSLDCGERHIEVHRSEDLVLDCLLSWHRASKGLTDYSFYRVWENSSETLI
AKGKEPYLTKSMVGPEDAGNYRCVLDTINQGHATVIRYDVTVLPPKHSEENQPPNIITQEEHETPVHVTP
QTPPGQEPESELYPELHPELYPELIPTVAQNPEKKMKTRLLILLTLGFVVLVASIIISVLHFRKVSAKLK
NASDEVKPTASGSKSDQSLSQQMGLKKASQADFNSDYSGDKSEATEN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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