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Report for CCDS28942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28942.1 Public Mus musculus 17 Twsg1 23 108 98 CCDS HistoryNCBI Gene:65960Re-query CCDS DB by CCDS ID:28942.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28942.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024906.5 ENSMUSP00000024906.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024906.5Link to Ensembl Protein Viewer:ENSMUSP00000024906.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000024906Re-query CCDS DB by Protein ID:ENSMUSP00000024906
Original member Current member EBI ENSMUST00000233580.1 ENSMUSP00000156695.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233580.1Link to Ensembl Protein Viewer:ENSMUSP00000156695.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233580Re-query CCDS DB by Protein ID:ENSMUSP00000156695
Original member NCBI NM_023053.3 NP_075540.1 Updated not alive Link to Nucleotide Sequence:NM_023053.3Link to Protein Sequence:NP_075540.1Re-query CCDS DB by Nucleotide ID:NM_023053Re-query CCDS DB by Protein ID:NP_075540
Current member NCBI NM_023053.4 NP_075540.1 Accepted alive Link to Nucleotide Sequence:NM_023053.4Link to Protein Sequence:NP_075540.1Re-query CCDS DB by Nucleotide ID:NM_023053Re-query CCDS DB by Protein ID:NP_075540Link to BLAST:NP_075540.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075540.1 222 Q9EP52 222 100% 0 0

Chromosomal Locations for CCDS 28942.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 65926285 65926466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65929547 65929813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65937801 65937900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65948658 65948777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGAAGTCACACTATATTGTGCTAGCTCTAGCCTCCCTGACGTTCCTGCTGTGTCTCCCCGTGTCCCAGA
GCTGTAACAAAGCACTCTGTGCCAGCGATGTGAGCAAATGCCTCATTCAGGAGCTCTGCCAGTGCCGGCC
TGGAGAAGGGAACTGCCCCTGCTGTAAGGAGTGCATGCTGTGCCTCGGGGCCCTGTGGGACGAGTGCTGC
GACTGTGTCGGTATGTGCAACCCTCGGAATTACAGCGACACCCCGCCCACATCCAAGAGCACCGTGGAGG
AGCTGCACGAGCCCATTCCGTCCCTGTTCAGGGCGCTGACGGAGGGCGACACCCAGCTGAACTGGAACAT
CGTCTCCTTCCCTGTGGCAGAGGAGCTGTCACACCATGAAAACCTAGTCTCCTTCCTAGAAACTGTGAAC
CAGCTGCACCACCAAAACGTGTCTGTTCCCAGCAACAATGTCCACGCCCCCTTCCCCAGCGACAAAGAGC
GCATGTGCACAGTGGTTTACTTTGATGACTGCATGTCCATCCACCAGTGTAAGATATCCTGCGAATCCAT
GGGTGCATCCAAGTATCGCTGGTTTCACAACGCCTGCTGCGAGTGCATCGGTCCAGAGTGCATTGACTAT
GGGAGTAAAACTGTCAAGTGTATGAACTGCATGTTTTAA

Translation (222 aa):
MKSHYIVLALASLTFLLCLPVSQSCNKALCASDVSKCLIQELCQCRPGEGNCPCCKECMLCLGALWDECC
DCVGMCNPRNYSDTPPTSKSTVEELHEPIPSLFRALTEGDTQLNWNIVSFPVAEELSHHENLVSFLETVN
QLHHQNVSVPSNNVHAPFPSDKERMCTVVYFDDCMSIHQCKISCESMGASKYRWFHNACCECIGPECIDY
GSKTVKCMNCMF


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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