NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25887.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25887.1 Public Mus musculus 12 Sostdc1 23 108 98 CCDS HistoryNCBI Gene:66042Re-query CCDS DB by CCDS ID:25887.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25887.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041407.6 ENSMUSP00000040230.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041407.6Link to Ensembl Protein Viewer:ENSMUSP00000040230.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000041407Re-query CCDS DB by Protein ID:ENSMUSP00000040230
Original member Current member NCBI NM_025312.3 NP_079588.1 Accepted alive Link to Nucleotide Sequence:NM_025312.3Link to Protein Sequence:NP_079588.1Re-query CCDS DB by Nucleotide ID:NM_025312Re-query CCDS DB by Protein ID:NP_079588Link to BLAST:NP_079588.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079588.1 206 Q9CQN4 206 100% 0 0

Chromosomal Locations for CCDS 25887.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 36314294 36314498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36317032 36317447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGCTTCCTCCTGCCATTCATCTCTCTCTCATTCCCCTGCTCTGCATCCTGATGAGAAACTGTTTGGCTT
TTAAAAATGATGCCACAGAAATCCTTTATTCACATGTGGTTAAACCTGTCCCGGCACACCCCAGCAGCAA
CAGCACCCTGAATCAAGCCAGGAATGGAGGCAGGCATTTCAGTAGCACTGGACTGGATCGAAACAGTCGA
GTTCAAGTGGGCTGCAGGGAACTGCGGTCCACCAAATACATTTCGGACGGCCAGTGCACCAGCATCAGCC
CTCTGAAGGAGCTGGTGTGCGCGGGCGAGTGCTTGCCCCTGCCGGTGCTTCCCAACTGGATCGGAGGAGG
CTATGGAACAAAGTACTGGAGCCGGAGGAGCTCTCAGGAGTGGCGGTGTGTCAACGACAAGACGCGCACC
CAGAGGATCCAGCTGCAGTGTCAGGACGGCAGCACGCGCACCTACAAAATCACCGTGGTCACGGCGTGCA
AGTGCAAGAGGTACACCCGTCAGCACAACGAGTCCAGCCACAACTTTGAAAGCGTGTCGCCCGCCAAGCC
CGCCCAGCACCACAGAGAGCGGAAGAGAGCCAGCAAATCCAGCAAGCACAGTCTGAGCTAG

Translation (206 aa):
MLPPAIHLSLIPLLCILMRNCLAFKNDATEILYSHVVKPVPAHPSSNSTLNQARNGGRHFSSTGLDRNSR
VQVGCRELRSTKYISDGQCTSISPLKELVCAGECLPLPVLPNWIGGGYGTKYWSRRSSQEWRCVNDKTRT
QRIQLQCQDGSTRTYKITVVTACKCKRYTRQHNESSHNFESVSPAKPAQHHRERKRASKSSKHSLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH