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Report for CCDS24656.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24656.1 Public Mus musculus 11 Rmnd5b 23 108 98 CCDS HistoryNCBI Gene:66089Re-query CCDS DB by CCDS ID:24656.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24656.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001081.9 ENSMUSP00000001081.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001081.9Link to Ensembl Protein Viewer:ENSMUSP00000001081.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000001081Re-query CCDS DB by Protein ID:ENSMUSP00000001081
Original member Current member NCBI NM_025346.1 NP_079622.1 Accepted alive Link to Nucleotide Sequence:NM_025346.1Link to Protein Sequence:NP_079622.1Re-query CCDS DB by Nucleotide ID:NM_025346Re-query CCDS DB by Protein ID:NP_079622Link to BLAST:NP_079622.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079622.1 393 Q91YQ7 393 100% 0 0

Chromosomal Locations for CCDS 24656.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 51624083 51624146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51624229 51624383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51624475 51624577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51625669 51625834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51626736 51626902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51626999 51627099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51627622 51627762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51627880 51628025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51629476 51629614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGAGCAGTGTGCCTGTGTGGAGAGGGAGCTGGACAAGGTCCTGCACAAGTTCCTAACCTACGGGCAGC
ATTGCGAGCAGAGTCTGGAGGAGCTGCTGCACTCCGTGGGCCAGCTGAGAGCCGAGCTGGCCAGTGCAGC
TCTCCAGGGCACCCCTCTCTCAGCCACGCTGTCCCTTGTGATGTCCCAGTGCTGTCGGAAGATCAGAGAC
ACAGTCCAGAAACTGGCTTCCGACCATAAGGACATTCACAGCAGCGTCTCTCGAGTGGGCAAAGCCATTG
ACAGGAACTTCGACTCTGAGATCTGCGGCGTGGTCTCGGATGCTGTGTGGGACTCCCGTGAGAAGCAGCA
GCAGATCCTGCAGATGGCCATCGTAGAGCACCTGTACCAGCAAGGCATGCTCAGTGTAGCGGAGGAGCTG
TGCCAGGAATCGACATTGAATGTGGACCTGGACTTCAAGCAGCCCTTCTTGGAGTTGAATCGGATCTTGG
AAGCTCTGCACGAGCAAGACCTAGGACCTGCGCTGGAATGGGCTGTATCTCACAGGCAGCGCCTGCTGGA
GCTCAACAGCTCGCTGGAGTTCAAGCTGCACCGGCTGCACTTTATCCGCCTCCTAGCTGGGGGCCCCGAG
AAGCAGCTGGAGGCCCTCAGCTATGCTCGGCACTTCCAGCCTTTTGCTAGGCTACACCAGAGAGAGATCC
AGGTGATGATGGGCAGTCTGGTGTACCTGCGGCTGGGCTTGGAGAAGTCACCCTACTGCCACCTCTTAGA
CAACAGCCACTGGGCGGAGATCTGTGAGACCTTTACTCGGGATGCATGCTCCCTCCTGGGACTTTCAGTG
GAGTCCCCACTTAGTGTCAGCTTCGCGTCTGGCTGTGTGGCGCTGCCCGTGCTGATGAACATTAAAGCTG
TGATCGAACAGAGGCAGTGCACTGGGGTGTGGAGTCACAAGGATGAGTTGCCGATTGAGATAGAGCTGGG
CATGAAGTGCTGGTACCACTCAGTGTTTGCATGCCCTATCCTGCGACAGCAGACCTCAGATTCCAACCCC
CCCATCAAGCTCATCTGTGGCCACGTCATCTCCAGAGATGCACTCAACAAACTCATCAATGGAGGAAAGC
TAAAGTGTCCCTACTGTCCCATGGAACAGAATCCAGCAGATGGGAAACGCATCATATTCTGA

Translation (393 aa):
MEQCACVERELDKVLHKFLTYGQHCEQSLEELLHSVGQLRAELASAALQGTPLSATLSLVMSQCCRKIRD
TVQKLASDHKDIHSSVSRVGKAIDRNFDSEICGVVSDAVWDSREKQQQILQMAIVEHLYQQGMLSVAEEL
CQESTLNVDLDFKQPFLELNRILEALHEQDLGPALEWAVSHRQRLLELNSSLEFKLHRLHFIRLLAGGPE
KQLEALSYARHFQPFARLHQREIQVMMGSLVYLRLGLEKSPYCHLLDNSHWAEICETFTRDACSLLGLSV
ESPLSVSFASGCVALPVLMNIKAVIEQRQCTGVWSHKDELPIEIELGMKCWYHSVFACPILRQQTSDSNP
PIKLICGHVISRDALNKLINGGKLKCPYCPMEQNPADGKRIIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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