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Report for CCDS77998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77998.1 Public Homo sapiens 5 MTMR12 24 110 108 CCDS HistoryNCBI Gene:54545Re-query CCDS DB by CCDS ID:77998.1Re-query CCDS DB by GeneID:54545See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77998.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000280285.9 ENSP00000280285.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000280285.9Link to Ensembl Protein Viewer:ENSP00000280285.5Re-query CCDS DB by Nucleotide ID:ENST00000280285Re-query CCDS DB by Protein ID:ENSP00000280285
Original member Current member NCBI NM_001294343.2 NP_001281272.1 Accepted alive Link to Nucleotide Sequence:NM_001294343.2Link to Protein Sequence:NP_001281272.1Re-query CCDS DB by Nucleotide ID:NM_001294343Re-query CCDS DB by Protein ID:NP_001281272Link to BLAST:NP_001281272.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001281272.1 693 Q9C0I1-2 693 100% 0 0

Chromosomal Locations for CCDS 77998.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 32229778 32230347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32234962 32235129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32239001 32239173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32242057 32242127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32243521 32243599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32248002 32248126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32248772 32248878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32255693 32255768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32263113 32263242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32268701 32268794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32270817 32270947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32271833 32271905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32273980 32274122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32276682 32276742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32312758 32312838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2082 nt):
ATGCTGGGGAAAGGAGTAGTCGGCGGTGGCGGCGGCACCAAGGCCCCCAAGCCCTCCTTCGTGTCGTACG
TACGCCCTGAGGAAATTCACACAAACGAAAAGGAAGTAACAGAGAAGGAAGTAACTCTTCACTTGTTGCC
AGGTGAACAGCTGCTTTGTGAAGCCAGCACAGTACTGAAGTATGTCCAGGAAGATTCCTGTCAGCATGGG
GTCTATGGGAGGCTTGTCTGCACAGACTTCAAGATTGCCTTCTTGGGTGATGATGAATCTGCATTGGATA
ATGATGAAACTCAATTTAAGAATAAGGTTATAGGAGAAAATGACATTACACTCCACTGTGTTGATCAGAT
TTATGGAGTGTTTGATGAGAAAAAGAAAACTCTCTTTGGACAACTGAAGAAATACCCTGAGAAGCTCATC
ATCCACTGCAAAGACCTTCGAGTGTTCCAGTTTTGTCTGAGGTACACAAAGGAAGAGGAAGTCAAAAGGA
TTGTCAGTGGCATAATTCATCATACCCAGGCTCCTAAACTGCTTAAACGATTATTTCTGTTTTCCTATGC
GACTGCTGCACAAAACAATACAGTCACTGATCCCAAGAACCATACCGTAATGTTTGACACACTTAAGGAC
TGGTGTTGGGAACTGGAACGGACCAAAGGCAACATGAAGTACAAAGCAGTGAGTGTCAACGAAGGCTATA
AAGTCTGTGAGAGATTGCCAGCATACTTTGTTGTCCCCACCCCTCTTCCTGAAGAGAATGTGCAGCGCTT
TCAGGGTCATGGCATACCAATATGGTGTTGGTCCTGCCACAATGGAAGTGCCCTTTTGAAAATGTCAGCA
CTGCCCAAAGAACAGGATGACGGCATTTTACAAATCCAAAAGAGCTTCTTAGATGGAATTTACAAGACCA
TCCACAGGCCACCCTATGAAATTGTTAAAACGGAAGACCTGTCAAGCAACTTCCTGTCCCTGCAGGAAAT
CCAGACTGCATACTCTAAATTTAAACAGCTATTTCTGATAGATAACAGTACTGAATTTTGGGACACAGAT
ATAAAATGGTTTTCTCTGTTGGAAAGTAGCAGCTGGCTTGACATAATCAGACGTTGCCTGAAAAAAGCAA
TAGAGATTACAGAATGTATGGAAGCACAAAACATGAATGTTCTTCTTTTAGAGGAGAATGCATCCGACCT
CTGCTGTCTCATTTCCTCTCTGGTGCAACTGATGATGGACCCCCACTGCAGAACCAGAATTGGTTTCCAG
AGCCTCATCCAAAAGGAGTGGGTCATGGGTGGCCACTGTTTCTTGGATCGCTGCAACCATCTCCGCCAGA
ACGACAAAGAGGAGGTTCCTGTGTTCCTGCTTTTCCTAGATTGTGTCTGGCAGCTGGTGCACCAGCATCC
CCCGGCATTTGAATTCACAGAGACTTACCTGACTGTTTTGTCAGATAGCCTGTATATACCTATTTTTAGC
ACCTTCTTCTTCAATTCACCTCATCAAAAAGATACTAACATGCATCAACGACAACTTTCTTTGCCACTTA
CACAATCTAAGTCATCTCCCAAAAGAGGATTTTTCAGGGAAGAAACAGATCATTTAATTAAAAACCTTCT
GGGCAAGAGAATTAGCAAACTTATTAATTCTTCTGATGAGCTCCAAGACAACTTTCGAGAGTTCTATGAC
AGCTGGCATAGCAAGTCCACTGACTACCATGGTTTGTTGTTACCGCATATCGAGGGGCCCGAAATCAAAG
TCTGGGCCCAGCGCTACCTACGTTGGATTCCAGAAGCCCAAATCCTAGGTGGTGGCCAAGTGGCCACTCT
GAGCAAACTCTTGGAAATGATGGAGGAAGTCCAGAGTTTACAAGAGAAGATCGACGAGAGACACCACAGC
CAGCAGGCCCCCCAGGCTGAGGCCCCCTGCCTGCTGAGGAACTCTGCCCGCCTCTCGTCTTTGTTTCCTT
TCGCTCTGCTCCAGCGACATTCCTCTAAGCCCGTCTTACCCACCAGTGGCTGGAAAGCTTTGGGAGATGA
AGACGATTTGGCCAAACGAGAAGATGAGTTCGTGGACCTAGGGGATGTGTGA

Translation (693 aa):
MLGKGVVGGGGGTKAPKPSFVSYVRPEEIHTNEKEVTEKEVTLHLLPGEQLLCEASTVLKYVQEDSCQHG
VYGRLVCTDFKIAFLGDDESALDNDETQFKNKVIGENDITLHCVDQIYGVFDEKKKTLFGQLKKYPEKLI
IHCKDLRVFQFCLRYTKEEEVKRIVSGIIHHTQAPKLLKRLFLFSYATAAQNNTVTDPKNHTVMFDTLKD
WCWELERTKGNMKYKAVSVNEGYKVCERLPAYFVVPTPLPEENVQRFQGHGIPIWCWSCHNGSALLKMSA
LPKEQDDGILQIQKSFLDGIYKTIHRPPYEIVKTEDLSSNFLSLQEIQTAYSKFKQLFLIDNSTEFWDTD
IKWFSLLESSSWLDIIRRCLKKAIEITECMEAQNMNVLLLEENASDLCCLISSLVQLMMDPHCRTRIGFQ
SLIQKEWVMGGHCFLDRCNHLRQNDKEEVPVFLLFLDCVWQLVHQHPPAFEFTETYLTVLSDSLYIPIFS
TFFFNSPHQKDTNMHQRQLSLPLTQSKSSPKRGFFREETDHLIKNLLGKRISKLINSSDELQDNFREFYD
SWHSKSTDYHGLLLPHIEGPEIKVWAQRYLRWIPEAQILGGGQVATLSKLLEMMEEVQSLQEKIDERHHS
QQAPQAEAPCLLRNSARLSSLFPFALLQRHSSKPVLPTSGWKALGDEDDLAKREDEFVDLGDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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