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Report for CCDS40647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40647.1 Public Mus musculus 9 Commd4 23 108 98 CCDS HistoryNCBI Gene:66199Re-query CCDS DB by CCDS ID:40647.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40647.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065358.8 ENSMUSP00000069078.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065358.8Link to Ensembl Protein Viewer:ENSMUSP00000069078.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000065358Re-query CCDS DB by Protein ID:ENSMUSP00000069078
Original member Current member NCBI NM_025417.2 NP_079693.1 Accepted alive Link to Nucleotide Sequence:NM_025417.2Link to Protein Sequence:NP_079693.1Re-query CCDS DB by Nucleotide ID:NM_025417Re-query CCDS DB by Protein ID:NP_079693Link to BLAST:NP_079693.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079693.1 199 Q9CQ02 199 100% 0 0

Chromosomal Locations for CCDS 40647.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 57155240 57155280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57155412 57155588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57155902 57155982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57156172 57156291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57156516 57156555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57156775 57156840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57157067 57157138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57158272 57158274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGAGGTTCCGGTTCTGTGGCGATCTGGACTGTCCCGACTGGGTCCTGGCAGAGATCAGCACACTGGCCA
AAATTTCCTCTGTGAAGCTGCGACTGCTGTGTAGCCAGGTGCTAAAGGAGCTTCTGGGTCAGGGGATTGA
TTATGAGAAGATCTTGAAGCTTACTGCTGATGCCAAGTTTGAGTCTGGAGACGTGAAGGCCACGGTCGCG
GTGCTGAGTTTCATCCTGTCCAGTGCAGCCAAGCATAGTGTCGACAGTGATTCCTTGTCCAGTGAGCTGC
AGCAGCTGGGGCTGCCCAAAGAGCATGCCACCAGCCTGTGCCGCTGTTACGAAGAGAAGCAGAGCCCCCT
GCAGGAGCACCTTCGGGCCTGTAGCCTACGTGTGAACAGGCTGGCCAGCGTGGGCTGGCGGGTAGACTAC
ACCCTGAGCTCCAGCCTGCTTCATTCTGTGGAGGAGCCCATGGTACATCTGCAGCTACAGGTTGTGCCTG
CTCCAGGTACCCAGGCCCAACCTGTTTCCATGTCCCTCTCGGCAGACAAGTTCCAGGTTCTCCTGGCAGA
ACTGAAGCAAGCCCAGACCATGATGACTGCTTTGGGCTGA

Translation (199 aa):
MRFRFCGDLDCPDWVLAEISTLAKISSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFESGDVKATVA
VLSFILSSAAKHSVDSDSLSSELQQLGLPKEHATSLCRCYEEKQSPLQEHLRACSLRVNRLASVGWRVDY
TLSSSLLHSVEEPMVHLQLQVVPAPGTQAQPVSMSLSADKFQVLLAELKQAQTMMTALG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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