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Report for CCDS15323.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15323.1 Public Mus musculus 1 Tmem9 23 108 98 CCDS HistoryNCBI Gene:66241Re-query CCDS DB by CCDS ID:15323.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15323.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063719.14 ENSMUSP00000065409.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063719.14Link to Ensembl Protein Viewer:ENSMUSP00000065409.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000063719Re-query CCDS DB by Protein ID:ENSMUSP00000065409
Original member Current member EBI ENSMUST00000117950.1 ENSMUSP00000113416.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117950.1Link to Ensembl Protein Viewer:ENSMUSP00000113416.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117950Re-query CCDS DB by Protein ID:ENSMUSP00000113416
Original member Current member EBI ENSMUST00000165125.7 ENSMUSP00000128185.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165125.7Link to Ensembl Protein Viewer:ENSMUSP00000128185.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165125Re-query CCDS DB by Protein ID:ENSMUSP00000128185
Original member Current member NCBI NM_001160145.1 NP_001153617.1 Accepted alive Link to Nucleotide Sequence:NM_001160145.1Link to Protein Sequence:NP_001153617.1Re-query CCDS DB by Nucleotide ID:NM_001160145Re-query CCDS DB by Protein ID:NP_001153617Link to BLAST:NP_001153617.1
Original member Current member NCBI NM_001160146.1 NP_001153618.1 Accepted alive Link to Nucleotide Sequence:NM_001160146.1Link to Protein Sequence:NP_001153618.1Re-query CCDS DB by Nucleotide ID:NM_001160146Re-query CCDS DB by Protein ID:NP_001153618Link to BLAST:NP_001153618.1
Original member Current member NCBI NM_025439.3 NP_079715.1 Accepted alive Link to Nucleotide Sequence:NM_025439.3Link to Protein Sequence:NP_079715.1Re-query CCDS DB by Nucleotide ID:NM_025439Re-query CCDS DB by Protein ID:NP_079715Link to BLAST:NP_079715.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153617.1 183 Q9CR23 183 100% 0 0
NP_001153618.1 183 Q9CR23 183 100% 0 0
NP_079715.1 183 Q9CR23 183 100% 0 0

Chromosomal Locations for CCDS 15323.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 136018542 136018607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 136019658 136019749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 136024618 136024726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 136027397 136027528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 136034068 136034220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGAAGCTGCTGTGTTTGGTGGCTGTGGTGGGGTGCTTGCTGGTGCCCCCAGCTCAAGCCAACAAGAGCT
CTGAAGATATCCGGTGCAAATGCATCTGTCCGCCTTACAGAAACATCAGCGGGCACATTTACAACCAGAA
TGTGTCTCAGAAGGACTGCAACTGCCTGCATGTGGTGGAGCCCATGCCAGTGCCTGGCCACGATGTGGAA
GCCTACTGCCTGCTCTGCGAGTGTAGGTACGAGGAGCGTAGCACCACAACCATCAAGGTCATTATTGTCA
TCTACCTGTCTGTGGTGGGGGCCCTCTTACTCTACATGGCCTTCCTGATGCTGGTGGACCCGCTCATCCG
GAAGCCAGATGCCTATACTGAGCAGCTGCACAATGAAGAGGAGAATGAGGATGCTCGCACCATGGCAACA
GCCGCTGCGTCCATTGGAGGACCCCGGGCAAACACTGTCCTGGAGCGGGTGGAAGGCGCTCAGCAGCGGT
GGAAGCTGCAGGTGCAGGAGCAGCGGAAGACGGTCTTCGACCGACACAAGATGCTCAGTTAG

Translation (183 aa):
MKLLCLVAVVGCLLVPPAQANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCNCLHVVEPMPVPGHDVE
AYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRKPDAYTEQLHNEEENEDARTMAT
AAASIGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDRHKMLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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