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Report for CCDS35673.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35673.1 Public Mus musculus 1 Ing5 23 108 98 CCDS HistoryNCBI Gene:66262Re-query CCDS DB by CCDS ID:35673.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35673.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027505.12 ENSMUSP00000027505.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027505.12Link to Ensembl Protein Viewer:ENSMUSP00000027505.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027505Re-query CCDS DB by Protein ID:ENSMUSP00000027505
Original member Current member NCBI NM_025454.2 NP_079730.1 Accepted alive Link to Nucleotide Sequence:NM_025454.2Link to Protein Sequence:NP_079730.1Re-query CCDS DB by Nucleotide ID:NM_025454Re-query CCDS DB by Protein ID:NP_079730Link to BLAST:NP_079730.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079730.1 240 Q9D8Y8-1 240 100% 0 0

Chromosomal Locations for CCDS 35673.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 93804003 93804039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93806048 93806119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93811782 93811948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93812407 93812518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93812666 93812759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93816375 93816510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93816638 93816699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93818281 93818323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGGCGACTGCCATGTACTTGGAGCACTATCTGGACAGCATTGAGAACCTTCCCTGTGAACTTCAGAGGA
ACTTCCAGCTGATGCGAGAGCTAGACCAGAGAACAGAAGATAAGAAAGCAGAGATCGACATCCTGGCTGC
AGAGTATATTTCCACAGTGAAGACTCTCTCGTCAGCCCAGCGTGTGGAGCACCTCCAGAAGATCCAGAGC
GCCTACAGCAAGTGCAAGGAGTACAGTGATGACAAGGTGCAGCTGGCCATGCAGACCTACGAGATGGTGG
ATAAACACATCCGAAGACTTGATGCTGACCTGGCGCGCTTTGAGGCTGACCTGAAGGACAGGATGGATGG
AAGTGACTTTGAGAGCACTGGAGCACGGAGCTTGAAAAAAGGCCGGAGTCAGAAAGAAAAAAGAAGCTCC
CGGGGCCGAGGCCGGCGGACGTCAGAAGAGGATACCCCAAAGAAGAAGAAACATAAAAGCGGGTCTGAGT
TTACTGACAGTATCCTATCTGTGCACCCCTCTGATGTGCTGGACATGCCTGTGGATCCGAATGAGCCTAC
ATACTGCTTGTGCCACCAGGTGTCCTACGGGGAGATGATCGGCTGTGACAATCCAGATTGTCCCATTGAG
TGGTTTCACTTTGCCTGCGTGGATCTCACCACAAAGCCCAAAGGAAAGTGGTTTTGTCCACGATGTGTTC
AGGAAAAGAGGAAGAAGAAGTAA

Translation (240 aa):
MATAMYLEHYLDSIENLPCELQRNFQLMRELDQRTEDKKAEIDILAAEYISTVKTLSSAQRVEHLQKIQS
AYSKCKEYSDDKVQLAMQTYEMVDKHIRRLDADLARFEADLKDRMDGSDFESTGARSLKKGRSQKEKRSS
RGRGRRTSEEDTPKKKKHKSGSEFTDSILSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCPIE
WFHFACVDLTTKPKGKWFCPRCVQEKRKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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