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Report for CCDS51502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51502.1 Public Mus musculus 5 Smim20 23 108 98 CCDS HistoryNCBI Gene:66278Re-query CCDS DB by CCDS ID:51502.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51502.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000147148.4 ENSMUSP00000121637.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147148.4Link to Ensembl Protein Viewer:ENSMUSP00000121637.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000147148Re-query CCDS DB by Protein ID:ENSMUSP00000121637
Original member Current member NCBI NM_001145433.1 NP_001138905.1 Accepted alive Link to Nucleotide Sequence:NM_001145433.1Link to Protein Sequence:NP_001138905.1Re-query CCDS DB by Nucleotide ID:NM_001145433Re-query CCDS DB by Protein ID:NP_001138905Link to BLAST:NP_001138905.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138905.1 69 D3Z7Q2 69 100% 0 0

Chromosomal Locations for CCDS 51502.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 53267244 53267358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53277143 53277199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53277897 53277934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (210 nt):
ATGGCAGCGGCCCGGAACCTGCGCACCGCGCTCATATTCGGAGGCTTCATCTCCATGGTCGGCGCCGCCT
TCTATCCCATCTACTTCCGGCCCCTTATGCGGCTGGAGGAATACCAGAAGGAGCAGGCTGTAAATCGAGC
TGGTATTGTCCAGGAAGATGTGCAACCGCCAGGGTTGAAAGTGTGGTCTGATCCATTTGGCAGGAAATGA

Translation (69 aa):
MAAARNLRTALIFGGFISMVGAAFYPIYFRPLMRLEEYQKEQAVNRAGIVQEDVQPPGLKVWSDPFGRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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