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Report for CCDS15187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15187.1 Public Mus musculus 1 Ppp1r7 23 108 98 CCDS HistoryNCBI Gene:66385Re-query CCDS DB by CCDS ID:15187.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15187.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027494.10 ENSMUSP00000027494.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027494.10Link to Ensembl Protein Viewer:ENSMUSP00000027494.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027494Re-query CCDS DB by Protein ID:ENSMUSP00000027494
Original member Current member NCBI NM_023200.3 NP_075689.1 Accepted alive Link to Nucleotide Sequence:NM_023200.3Link to Protein Sequence:NP_075689.1Re-query CCDS DB by Nucleotide ID:NM_023200Re-query CCDS DB by Protein ID:NP_075689Link to BLAST:NP_075689.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075689.1 361 Q3UM45 361 100% 0 0

Chromosomal Locations for CCDS 15187.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 93343660 93343711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93346156 93346287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93350325 93350380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93350949 93351014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93351506 93351636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93352517 93352679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93354329 93354445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93357757 93357861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93360726 93360812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93364890 93365066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGGCGGCAGAGCGCGGCGCGGGGCAGCAACAGTCGCAGGAGATGATGGAGGTTGACAGGCGGGTTGAAT
CTGAAGAATCAGGTGATGAGGAAGGGAAGAAGCATGGTGGCGGCGGCATCGTGGCAAACCTCAGCGAGCA
GAGCCTGAAGGATGGAGTAGATCGGGGTGCAGAAGACCCAGAAGAGGAACATGAGCTGGCAGTAGATATG
GAAACCATCAACCTGGACCGAGATGCAGAGGATGTTGATCTGACTCACTATCGAATTGGAAAGATTGAAG
GCTTGGAGGTGCTAAAGAAAGTGAAGTCACTCTGCCTTCGTCAAAACCTAATTAAATGCATTGAAAACCT
GGAAGAACTGCAGAGTCTTCGAGAACTGGATCTCTATGATAATCAGATCAAGAAGATTGAGAATCTTGAG
GCACTGACAGAATTGGAGGTTCTAGATATTTCTTTTAATATGCTGAGGAACATTGAAGGGATTGACAAAC
TGACACAGCTGAAAAAACTCTTCTTGGTCAACAATAAAATCAATAAAATTGAGAACATAAGCAATTTACA
TCAACTGCAAATGTTGGAGCTGGGGTCTAACCGGATTCGGGCAATTGAAAATATCGACACATTAACCAAC
CTGGAGAGTTTGTTTCTGGGGAAAAACAAAATTACAAAACTTCAGAACCTGGATGCACTTACCAACCTGA
CAGTCCTCAGTGTGCAGAGCAACCGGCTAGCAAAGATCGAAGGTCTACAGAGCTTGGTGAACCTGCGGGA
ACTATACCTCAGCAACAATGGTATCGAGGTTATCGAGGGCCTGGAGAACAACAACAAACTCACCATGTTG
GATATTGCATCAAATAGAATAAAAAAGATTGAGAATATCAGCCATCTGACAGAACTGCAAGAATTCTGGA
TGAATGACAATCTACTGGAGAGCTGGAGTGACCTTGATGAGCTGAAGGGTGCCAGGAGTCTGGAGACCGT
GTACCTGGAGCGCAACCCCCTGCAGAAGGATCCACAATACCGGCGGAAGGTCATGCTGGCCTTACCCTCT
GTGCGGCAGATCGACGCCACATACGTCAGGTTCTGA

Translation (361 aa):
MAAERGAGQQQSQEMMEVDRRVESEESGDEEGKKHGGGGIVANLSEQSLKDGVDRGAEDPEEEHELAVDM
ETINLDRDAEDVDLTHYRIGKIEGLEVLKKVKSLCLRQNLIKCIENLEELQSLRELDLYDNQIKKIENLE
ALTELEVLDISFNMLRNIEGIDKLTQLKKLFLVNNKINKIENISNLHQLQMLELGSNRIRAIENIDTLTN
LESLFLGKNKITKLQNLDALTNLTVLSVQSNRLAKIEGLQSLVNLRELYLSNNGIEVIEGLENNNKLTML
DIASNRIKKIENISHLTELQEFWMNDNLLESWSDLDELKGARSLETVYLERNPLQKDPQYRRKVMLALPS
VRQIDATYVRF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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