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Report for CCDS29341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29341.1 Public Mus musculus 18 Ska1 23 108 98 CCDS HistoryNCBI Gene:66468Re-query CCDS DB by CCDS ID:29341.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29341.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040188.15 ENSMUSP00000049156.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040188.15Link to Ensembl Protein Viewer:ENSMUSP00000049156.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000040188Re-query CCDS DB by Protein ID:ENSMUSP00000049156
Original member Current member EBI ENSMUST00000177604.1 ENSMUSP00000137357.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177604.1Link to Ensembl Protein Viewer:ENSMUSP00000137357.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177604Re-query CCDS DB by Protein ID:ENSMUSP00000137357
Original member Current member NCBI NM_001164355.1 NP_001157827.1 Accepted alive Link to Nucleotide Sequence:NM_001164355.1Link to Protein Sequence:NP_001157827.1Re-query CCDS DB by Nucleotide ID:NM_001164355Re-query CCDS DB by Protein ID:NP_001157827Link to BLAST:NP_001157827.1
Original member Current member NCBI NM_025581.4 NP_079857.3 Accepted alive Link to Nucleotide Sequence:NM_025581.4Link to Protein Sequence:NP_079857.3Re-query CCDS DB by Nucleotide ID:NM_025581Re-query CCDS DB by Protein ID:NP_079857Link to BLAST:NP_079857.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157827.1 254 Q9CPV1 254 100% 0 0
NP_079857.3 254 Q9CPV1 254 100% 0 0

Chromosomal Locations for CCDS 29341.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 74196903 74197051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74197514 74197683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74199900 74200037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74202590 74202687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74204264 74204388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74206789 74206873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGGACTCAGAGCTAGAAGACTTATGCTCTTATGTTAATGAGAAGATTGGAAATATTAAGAAAATTCTGT
CGATAAGAAATCTTGGCCAGGACCCTGCCTTGAAGACCACCTTAAGTAAAATAGGAGATGAGATCATTGC
AGTAAATGAGCTTCTAAATAAATTTGAATTGGAAATTCAGTATCAAGAACAAACTAACAGTTCACTCAAG
GAGCTCTGTGAATCTCTTAGAGAAGAGTGTGAAGATGTGGAACATCTCAAAGAACACGTCCCTCCCCATC
TGCCTCAAGTGACGGCGACCCAGAGCTTAGTTCACAAGCCAGAGCCGGATCCTAAAGAGTCAGACAAAGC
TGAGGAGCCTGGACTGCCGAAGAAGCCCCCCAGAGAGCAGAGGATTATCAAGGAAATGCAATTTATAACT
ATGGATGAATTCAGTGACGTTCCTGCGTACATGAAATCCCGTTTAACATATTGTCAAATTAATGATATTA
TTAAGGAAATTAACAAGGCAGTAGTTAGCAAATATAAGATTATGCATCAACCAAAAGCATCTATGAGCTC
TGTGAAGAGAAATCTCTACCAGAGATTTATTAATGAAGAAACGAAGGACACGAAAGGTCATCACTTCATC
GTGGAAGCTGACATAAAGGAATTCACGGCTTTGAAAGTTGACAAGAGGTTTTATGTGATTATGCACATTT
TGCGGCATTGCCACAGACTGTCAGAGGTCCGAGGGGGAGGACTTACCCGATACGTCATCACCTGA

Translation (254 aa):
MDSELEDLCSYVNEKIGNIKKILSIRNLGQDPALKTTLSKIGDEIIAVNELLNKFELEIQYQEQTNSSLK
ELCESLREECEDVEHLKEHVPPHLPQVTATQSLVHKPEPDPKESDKAEEPGLPKKPPREQRIIKEMQFIT
MDEFSDVPAYMKSRLTYCQINDIIKEINKAVVSKYKIMHQPKASMSSVKRNLYQRFINEETKDTKGHHFI
VEADIKEFTALKVDKRFYVIMHILRHCHRLSEVRGGGLTRYVIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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