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Report for CCDS21519.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21519.1 Public Mus musculus 7 Lamtor1 23 108 98 CCDS HistoryNCBI Gene:66508Re-query CCDS DB by CCDS ID:21519.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21519.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033131.11 ENSMUSP00000033131.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033131.11Link to Ensembl Protein Viewer:ENSMUSP00000033131.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033131Re-query CCDS DB by Protein ID:ENSMUSP00000033131
Original member Current member NCBI NM_025605.3 NP_079881.2 Accepted alive Link to Nucleotide Sequence:NM_025605.3Link to Protein Sequence:NP_079881.2Re-query CCDS DB by Nucleotide ID:NM_025605Re-query CCDS DB by Protein ID:NP_079881Link to BLAST:NP_079881.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079881.2 161 Q9CQ22 161 100% 0 0

Chromosomal Locations for CCDS 21519.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 101905999 101906040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101909664 101909809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101910029 101910106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101910420 101910546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101911273 101911365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGGGGTGCTGCTATAGCAGCGAAAACGAGGACTCGGACCAGGATCGGGAGGAGAGGAAGCTGCTGCTGG
ACCCCAGTAGCACCCCTACCAAAGCCCTCAATGGAGCCGAGCCCAACTACCATAGCCTACCTTCAGCTCG
CACAGATGAGCAGGCCCTGCTTTCCTCCATCCTTGCCAAGACAGCTAGCAACATCATTGATGTGTCTGCC
GCAGACTCCCAGGGCATGGAACAGCATGAGTACATGGACCGGGCAAGGCAGTACAGTACCCGCTTGGCTG
TGCTTAGCAGCAGTCTGACCCATTGGAAGAAGCTGCCACCGTTGCCATCTCTCACCAGCCAGCCCCACCA
AGTGCTGGCCAGTGAGCCTATCCCCTTCTCTGACTTGCAGCAGGTCTCCAGGATAGCTGCGTATGCCTAT
AGTGCACTTTCTCAGATCCGCGTGGATGCGAAAGAAGAGCTGGTTGTACAGTTTGGGATCCCATGA

Translation (161 aa):
MGCCYSSENEDSDQDREERKLLLDPSSTPTKALNGAEPNYHSLPSARTDEQALLSSILAKTASNIIDVSA
ADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLASEPIPFSDLQQVSRIAAYAY
SALSQIRVDAKEELVVQFGIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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