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Report for CCDS27659.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27659.1 Public Mus musculus 15 Tab1 23 108 98 CCDS HistoryNCBI Gene:66513Re-query CCDS DB by CCDS ID:27659.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27659.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023050.8 ENSMUSP00000023050.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023050.8Link to Ensembl Protein Viewer:ENSMUSP00000023050.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023050Re-query CCDS DB by Protein ID:ENSMUSP00000023050
Original member Current member NCBI NM_025609.3 NP_079885.2 Accepted alive Link to Nucleotide Sequence:NM_025609.3Link to Protein Sequence:NP_079885.2Re-query CCDS DB by Nucleotide ID:NM_025609Re-query CCDS DB by Protein ID:NP_079885Link to BLAST:NP_079885.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079885.2 502 Q8CF89 502 100% 0 0

Chromosomal Locations for CCDS 27659.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 80133156 80133188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80148227 80148363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80148687 80148840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80149782 80149868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80150427 80150565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80152665 80152778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80153632 80153743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80155757 80155901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80157604 80157826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80158751 80158907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80160074 80160281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGGCGGCGCAGAGGAGGAGCCTGCTCCAGAGTGAGCAGCAGCCAAGCTGGACAGATGACCTGCCACTCT
GTCACCTCTCTGGAGTTGGTTCAGCGTCCAACCGCAGCTACTCTGCTGATGGCAAGGGCACTGAGAGCCA
CCCTCCGGAGGACAACTGGCTTAAGTTCAGAAGTGAAAATAACTGCTTCCTGTACGGGGTCTTCAATGGC
TATGATGGCAACCGCGTGACCAACTTTGTGGCGCAGAGGCTTTCTGCAGAGCTCCTGCTGGGCCAGCTCA
ACACTGAGCACACTGAGGCTGATGTGCGACGGGTCCTGCTGCAGGCCTTTGATGTGGTGGAGAGGAGCTT
CCTGGAGTCTATCGATGATGCCTTAGCTGAGAAAGCAAGCCTCCAGTCCCAGCTGCCGGAGGGTGTGCCC
CAGCACCAGCTGCCACCTCAGTACCAGAAGATCCTTGAGAGACTCAAGGCACTGGAGAGGGAGATTTCGG
GAGGAGCCATGGCTGTCGTGGCAGTCCTTCTCAACAGCAAGCTCTACGTTGCCAATGTCGGTACGAACAG
GGCCCTTCTGTGCAAATCTACAGTGGATGGGTTACAGGTTACACAGCTAAACATGGACCACACCACCGAG
AACGAGGACGAGCTCTTTCGGCTTTCGCAACTGGGTTTAGACGCAGGGAAGATCAAGCAGATGGGCGTCA
TCTGTGGACAGGAGAGCACCAGGCGGATTGGGGATTACAAGGTCAAATATGGCTACACCGACATTGACCT
GCTCAGCGCTGCCAAGTCCAAACCCATCATCGCAGAGCCGGAAATTCATGGCGCACAGCCTCTGGATGGC
GTGACGGGCTTCCTGGTGCTGATGTCAGAGGGGCTGTACAAGGCCCTGGAGGCAGCCCATGGGCCTGGGC
AGGCCAACCAGGAGATTGCCGCGATGATTGACACCGAGTTTGCCAAGCAGACCTCCCTGGATGCGGTTGC
CCAGGCTGTGGTAGACCGTGTAAAGCGGATCCACAGTGACACCTTTGCCAGTGGTGGGGAGCGTGCCAAG
TTCTGCCCACGGCATGAAGACATGACCCTGCTGGTGAGGAACTTTGGCTATCCATTGGGTGAAATGAGCC
AGCCTACACCGACCCCTGCCCCAGGGGGCCGTGTGTACCCTGTTTCTGTGCCCTACTCAAGTGCCCAGAG
CACCAGCAAGACTAGTGTGACTCTGTCCCTCGTCATGCCTTCTCAGGGCCAGATGGTCAACGGCTCTCAC
AGTGCCTCCACTCTGGACGAAGCCACTCCCACACTCACTAACCAGAGCCCCACTCTGACCCTGCAGTCCA
CCAACACGCACACCCAGAGCAGCAGCTCCAGCTCTGACGGGGGCCTCTTCCGCTCCAGACCGGCTCACTC
ACTTCCACCCGGAGAGGATGGCCGTGTGGAGCCCTATGTGGACTTTGCTGAGTTCTACCGACTCTGGAGC
GTGGACCACGGCGAGCAGAGCGTGATGACGGCACCTTAG

Translation (502 aa):
MAAQRRSLLQSEQQPSWTDDLPLCHLSGVGSASNRSYSADGKGTESHPPEDNWLKFRSENNCFLYGVFNG
YDGNRVTNFVAQRLSAELLLGQLNTEHTEADVRRVLLQAFDVVERSFLESIDDALAEKASLQSQLPEGVP
QHQLPPQYQKILERLKALEREISGGAMAVVAVLLNSKLYVANVGTNRALLCKSTVDGLQVTQLNMDHTTE
NEDELFRLSQLGLDAGKIKQMGVICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDG
VTGFLVLMSEGLYKALEAAHGPGQANQEIAAMIDTEFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERAK
FCPRHEDMTLLVRNFGYPLGEMSQPTPTPAPGGRVYPVSVPYSSAQSTSKTSVTLSLVMPSQGQMVNGSH
SASTLDEATPTLTNQSPTLTLQSTNTHTQSSSSSSDGGLFRSRPAHSLPPGEDGRVEPYVDFAEFYRLWS
VDHGEQSVMTAP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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