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Report for CCDS28893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28893.1 Public Mus musculus 17 Ubxn6 23 108 98 CCDS HistoryNCBI Gene:66530Re-query CCDS DB by CCDS ID:28893.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28893.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019722.11 ENSMUSP00000019722.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019722.11Link to Ensembl Protein Viewer:ENSMUSP00000019722.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000019722Re-query CCDS DB by Protein ID:ENSMUSP00000019722
Original member Current member NCBI NM_024432.3 NP_077752.1 Accepted alive Link to Nucleotide Sequence:NM_024432.3Link to Protein Sequence:NP_077752.1Re-query CCDS DB by Nucleotide ID:NM_024432Re-query CCDS DB by Protein ID:NP_077752Link to BLAST:NP_077752.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077752.1 442 Q99PL6-1 442 100% 0 0

Chromosomal Locations for CCDS 28893.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56068555 56068683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56068960 56069108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56069184 56069314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56069394 56069613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56069691 56069775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56070652 56070727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56070888 56070985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56072401 56072529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56072720 56072784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56073073 56073236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56074836 56074918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGAAGAAGTTCTTCCAGGAAATCAAGGCTGACATCAAGTTCAAGAGCGCGGGGCCCGGCCAGAAGCTTA
CGGATTCCGCAGGGGAGAAGACCACCAAAGGAAAGTCACCACAGCTGGCCCTCCGGCAGCCCCGTCAGGG
CCCCACTGATGAGGCACAGATGGCTGCCGCTGCTGCCCTGGCCCGGCTGGAACAGAAACAGCCCCGAGCC
CGGGGCCCTACATCTCAGGACTCCATCCGGAACCAGGTGAGGAAGGAACTTCAGGCCGAAGCCACCTCCA
GCAACAATCCAGGAGCTCCTGGGACCAACTCGGTACCTGAGCCCAAGGAGGAAATCTCTCCCCATTTGGC
AGTGCCTGGTGTGTTCTTCATCTGTCCGCTCACAGGTGTCACCCTGAGGAGGGACCAGCGGGATGCCCAC
ATCAAGCAGGCCATCCTGTCGCACTTTTCCACAGACCCCGTGGCTGCCTCCATCATGAAGATACATACAT
TCAATAGAGACCGGGACCGAGTGAAGCTGGGTGTGGATACTATCGCCAAATACCTGGACAACATCCATTT
ACACCCAGAGGAAGAAAAATACCAGAAAATCAAACTGCAGAACAAGGTGTTCCAGGAGCGCATCAACTGT
CTCGAGGGAAGCCACGAGTTCTTTGAAGCCATTGGCTTCAAGAAGGTCACCCTACCTGTGCCGGATCAGG
AGGGCCAGGAGGAGTTCTACGTTCTGGGTGAGGATGCACGGGCGCAGCCGCAGAACCTGGCGCGGCACAA
GCAGCAGCTGTTGGATGCCGAGCCTGTGCGGGCCACTCTGGATCGGCAGCTCCGAGTCTTCCGCCCCTCG
GCTCTGGCCTCACATTTTGAACTCCCCTCAGATTTCTTCAGCCTTACAGCTGAGGAGGTGAAGCGGGAGC
AAAGGCTCAGGACAGAGGCGGTGGAGCGACTGAGCTCACTCAGGACCAAAGCCATGCGGGAGAAAGAGGA
GCAGCGGGAGCTTCGCAAGTATACCTATGCCCTTGTGCGCGTGCGCCTGCCAGATGGCTGTCTACTGCAA
GGGACCTTCTATGCCCGGGAGAAGCTATCCGCGCTCTTCCGATTTGTGCGCGAGGCGCTACAGAACGACT
GGCTGCCCTTTGAGCTGAGGGCCTCCGGTGGACAGAAGCTGGAGGAGAACGAGGCCCTGGCCTTGAATGA
GTGTGGGCTGGTACCCTCTGCCCTGTTGACCTTCTCCTGGGATGCTTCAGTGTTGGAAGATATAAGGGCA
GCAGGAGCTGAGCCAGCAAAATCTGTCTTGAGGCCTGAGCTGCTTGCAGCCATCGAGCAACTCTCCTGA

Translation (442 aa):
MKKFFQEIKADIKFKSAGPGQKLTDSAGEKTTKGKSPQLALRQPRQGPTDEAQMAAAAALARLEQKQPRA
RGPTSQDSIRNQVRKELQAEATSSNNPGAPGTNSVPEPKEEISPHLAVPGVFFICPLTGVTLRRDQRDAH
IKQAILSHFSTDPVAASIMKIHTFNRDRDRVKLGVDTIAKYLDNIHLHPEEEKYQKIKLQNKVFQERINC
LEGSHEFFEAIGFKKVTLPVPDQEGQEEFYVLGEDARAQPQNLARHKQQLLDAEPVRATLDRQLRVFRPS
ALASHFELPSDFFSLTAEEVKREQRLRTEAVERLSSLRTKAMREKEEQRELRKYTYALVRVRLPDGCLLQ
GTFYAREKLSALFRFVREALQNDWLPFELRASGGQKLEENEALALNECGLVPSALLTFSWDASVLEDIRA
AGAEPAKSVLRPELLAAIEQLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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