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Report for CCDS14669.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14669.1 Public Homo sapiens X SOX3 24 110 108 CCDS HistoryNCBI Gene:6658Re-query CCDS DB by CCDS ID:14669.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14669.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370536.5 ENSP00000359567.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370536.5Link to Ensembl Protein Viewer:ENSP00000359567.2Re-query CCDS DB by Nucleotide ID:ENST00000370536Re-query CCDS DB by Protein ID:ENSP00000359567
Original member Current member NCBI NM_005634.3 NP_005625.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005634.3Link to Protein Sequence:NP_005625.2Re-query CCDS DB by Nucleotide ID:NM_005634Re-query CCDS DB by Protein ID:NP_005625Link to BLAST:NP_005625.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005625.2 446 P41225 446 100% 0 0

Chromosomal Locations for CCDS 14669.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 140503720 140505060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGCGACCTGTTCGAGAGAACTCATCAGGTGCGAGAAGCCCGCGGGTTCCTGCTGATTTGGCGCGGAGCA
TTTTGATAAGCCTACCCTTCCCGCCGGACTCGCTGGCCCACAGGCCCCCAAGCTCCGCTCCGACGGAGTC
CCAGGGCCTTTTCACCGTGGCCGCTCCAGCCCCGGGAGCGCCTTCTCCTCCCGCCACGCTGGCGCACCTT
CTTCCCGCCCCGGCAATGTACAGCCTTCTGGAGACTGAACTCAAGAACCCCGTAGGGACACCCACACAAG
CGGCGGGCACCGGCGGCCCCGCAGCCCCGGGAGGCGCAGGCAAGAGTAGTGCGAACGCAGCCGGCGGCGC
GAACTCGGGCGGCGGCAGCAGCGGTGGTGCGAGCGGAGGTGGCGGGGGTACAGACCAGGACCGTGTGAAA
CGGCCCATGAACGCCTTCATGGTATGGTCCCGCGGGCAGCGGCGCAAAATGGCCCTGGAGAACCCCAAGA
TGCACAATTCTGAGATCAGCAAGCGCTTGGGCGCCGACTGGAAACTGCTGACCGACGCCGAGAAGCGACC
ATTCATCGACGAGGCCAAGCGACTTCGCGCCGTGCACATGAAGGAGTATCCGGACTACAAGTACCGACCG
CGCCGCAAGACCAAGACGCTGCTCAAGAAAGATAAGTACTCCCTGCCCAGCGGCCTCCTGCCTCCCGGTG
CCGCGGCCGCCGCCGCCGCTGCCGCGGCCGCAGCCGCTGCCGCCAGCAGTCCGGTGGGCGTGGGCCAGCG
CCTGGACACGTACACGCACGTGAACGGCTGGGCCAACGGCGCGTACTCGCTGGTGCAGGAGCAGCTGGGC
TACGCGCAGCCCCCGAGCATGAGCAGCCCGCCGCCGCCGCCCGCGCTGCCGCCGATGCACCGCTACGACA
TGGCCGGCCTGCAGTACAGCCCAATGATGCCGCCCGGCGCTCAGAGCTACATGAACGTCGCTGCCGCGGC
CGCCGCCGCCTCGGGCTACGGGGGCATGGCGCCCTCAGCCACAGCAGCCGCGGCCGCCGCCTACGGGCAG
CAGCCCGCCACCGCCGCGGCCGCAGCTGCGGCCGCAGCCGCCATGAGCCTGGGCCCCATGGGCTCGGTAG
TGAAGTCTGAGCCCAGCTCGCCGCCGCCCGCCATCGCATCGCACTCTCAGCGCGCGTGCCTCGGCGACCT
GCGCGACATGATCAGCATGTACCTGCCACCCGGCGGGGACGCGGCCGACGCCGCCTCTCCGCTGCCCGGC
GGTCGCCTGCACGGCGTGCACCAGCACTACCAGGGCGCCGGGACTGCAGTCAACGGAACGGTGCCGCTGA
CCCACATCTGA

Translation (446 aa):
MRPVRENSSGARSPRVPADLARSILISLPFPPDSLAHRPPSSAPTESQGLFTVAAPAPGAPSPPATLAHL
LPAPAMYSLLETELKNPVGTPTQAAGTGGPAAPGGAGKSSANAAGGANSGGGSSGGASGGGGGTDQDRVK
RPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKYRP
RRKTKTLLKKDKYSLPSGLLPPGAAAAAAAAAAAAAAASSPVGVGQRLDTYTHVNGWANGAYSLVQEQLG
YAQPPSMSSPPPPPALPPMHRYDMAGLQYSPMMPPGAQSYMNVAAAAAAASGYGGMAPSATAAAAAAYGQ
QPATAAAAAAAAAAMSLGPMGSVVKSEPSSPPPAIASHSQRACLGDLRDMISMYLPPGGDAADAASPLPG
GRLHGVHQHYQGAGTAVNGTVPLTHI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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