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Report for CCDS19239.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19239.1 Public Mus musculus 5 Ccdc96 23 108 98 CCDS HistoryNCBI Gene:66717Re-query CCDS DB by CCDS ID:19239.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19239.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060100.2 ENSMUSP00000059636.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060100.2Link to Ensembl Protein Viewer:ENSMUSP00000059636.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000060100Re-query CCDS DB by Protein ID:ENSMUSP00000059636
Original member Current member NCBI NM_025725.3 NP_080001.1 Accepted alive Link to Nucleotide Sequence:NM_025725.3Link to Protein Sequence:NP_080001.1Re-query CCDS DB by Nucleotide ID:NM_025725Re-query CCDS DB by Protein ID:NP_080001Link to BLAST:NP_080001.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080001.1 584 Q9CR92 584 100% 0 0

Chromosomal Locations for CCDS 19239.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 36484652 36486406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1755 nt):
ATGGACAGCCACTACGGGGACATCGAGGGCAAAGACCGAGCCGAGGAAGGCCTGGCCAGGCAGTCGCTCG
AGATCAAGGTTAGCTCCGAACCTCTGACTCCGGCCAACCCTGTAGAGCAGGAGCCAGAGCCGAAGCCAGA
GCCGGAGCCGACGCAAGGGCGGGAGCCTGAGAGCGAGACCCAGCCGGTGTCGGACAGCTCAAAAGCGAAG
GATTCGGAGGGGATCGATTACGCGCATGTTGAGGTCCCGGAAAGTCCGGGGGCCGCTGAGACCGCGGGCG
AGGCCGTGTCCCGAGAGCCAGAGAGTCTGCCACAGACCCAGCCCAAGACCAAGCCGGAGTCCAAGGAACC
AGAGGACAAAGACGAAGACGAGGATGAGGACGAGGATGAGGACGAGGACGAGGACGAGGATGAGGATGAG
GATGAGGATGAGGGAGAGGAACGGGACAGGCCAGAGAAGCCGAAGGGCAAGGGGAAGAGGGAGAAGAGGA
AGGAGTCACGGTTCCGGCCATCTCTACCGCTGACCACAATTGTTGAGGAGGGGGCTGCCCCAGGCCCACA
AGCTGCGAAAGAGAAAGCAAGGGAGTCACTGAAGAAGAGAGACAGTGAAGAGATCGAGGGGACAGATCGA
GAACGACACAAAAGCACAGAAGAGCAACTTCACCCTGGAGAGGCCAAGGAAGAGGAGAAACAAAAAGGGG
CGTCCACTGAAGAGTTTGAGTGGACAGCGGACATGCAGAAGCTGCAAGAGCAGCAACTGCGCGGCGAGCT
GGTGGAACAGTACCACTCCCTGCTAGTGGAGCGGAACCGTTATCAGCGCTACAACATGTACCTACAGCAG
AAGATTCACGAGACCCTACGCAAGAAGGGGCTGGAAGCAGCGGCGGAACCTGGGGACAAGAGCGCTGAAC
CCGAATCTCCCGAGAAAGAGCAAGCATACTTGCGCTATCTGGCCATGCTGGAGGAACTGAAGAAACAAGA
GGCAGACGACTTAGAGTGGTACCGTCAGGAGGTACGGGAGCTGAAGCAGCAGTGCCAAGAGAAGCAGACC
AGGGTGGAGAAAGAGTGGCGGCGCTTCCAGGCCCTCAAGAAGCAGGTGGTGATGCAGGTCATGGGCAGTT
GCCGCACGCGTGGTGGGCGCCAGGCTGCCCTGAGAGAGGTGGAACAGCTTCAGGCCCTGGAGGATAAGAA
GGAGAAGGAGATGAGCGCCGTGCGTCTCGAGAACGTGCAGCTGAAGCAGAGCCTGGTACACTTTGAAACC
AGGATGAAGGCCCAGGAGGACTTGGCTGAGGGGCTGCTCCTCATCGACTTTGAACAGCTCAAAATTGAGA
ACCAGACCTTCAACGAGAAAGTAGAGGAACGAAACGAGGAACTTTTAAAACTGCGCACTAAGGTGACCAG
CAACGTGCAGATTATAACGCACGTGAAGGAAAAGCTGTCTTTCATAGATACGGAGAACTCATGCAAAAAG
GCACAACTTTCGGAAGTGGATGCCCAGGTGGCCCTAGGAAGAGACCTGTTGACGAAGACAAAACAAGCCC
GCGACAGCCTGCGAATCGACAACGTCAAGCTGAGTCAGAAATGTGGGCTTCTGGGTAAGGAATCACTCCT
CCGAGACTTGGAAGAAAAGGTGGAGAAGACAGAAATGCTCAACAGGCGCCTGGAATCCCTGAAGCGCCAT
CATGCCGGGCTCGCCTTGTCCTGCAAAGGGGTGAAGCAAAAGATCAGGGAAGCCAAAACTTTCCTCCCCT
CTTGA

Translation (584 aa):
MDSHYGDIEGKDRAEEGLARQSLEIKVSSEPLTPANPVEQEPEPKPEPEPTQGREPESETQPVSDSSKAK
DSEGIDYAHVEVPESPGAAETAGEAVSREPESLPQTQPKTKPESKEPEDKDEDEDEDEDEDEDEDEDEDE
DEDEGEERDRPEKPKGKGKREKRKESRFRPSLPLTTIVEEGAAPGPQAAKEKARESLKKRDSEEIEGTDR
ERHKSTEEQLHPGEAKEEEKQKGASTEEFEWTADMQKLQEQQLRGELVEQYHSLLVERNRYQRYNMYLQQ
KIHETLRKKGLEAAAEPGDKSAEPESPEKEQAYLRYLAMLEELKKQEADDLEWYRQEVRELKQQCQEKQT
RVEKEWRRFQALKKQVVMQVMGSCRTRGGRQAALREVEQLQALEDKKEKEMSAVRLENVQLKQSLVHFET
RMKAQEDLAEGLLLIDFEQLKIENQTFNEKVEERNEELLKLRTKVTSNVQIITHVKEKLSFIDTENSCKK
AQLSEVDAQVALGRDLLTKTKQARDSLRIDNVKLSQKCGLLGKESLLRDLEEKVEKTEMLNRRLESLKRH
HAGLALSCKGVKQKIREAKTFLPS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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