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Report for CCDS39520.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39520.1 Public Mus musculus 6 Jkampl 23 108 98 CCDS HistoryNCBI Gene:66740Re-query CCDS DB by CCDS ID:39520.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39520.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070163.5 ENSMUSP00000068770.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070163.5Link to Ensembl Protein Viewer:ENSMUSP00000068770.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000070163Re-query CCDS DB by Protein ID:ENSMUSP00000068770
Original member NCBI NM_025737.3 NP_080013.1 Updated not alive Link to Nucleotide Sequence:NM_025737.3Link to Protein Sequence:NP_080013.1Re-query CCDS DB by Nucleotide ID:NM_025737Re-query CCDS DB by Protein ID:NP_080013
Current member NCBI NM_025737.4 NP_080013.1 Accepted alive Link to Nucleotide Sequence:NM_025737.4Link to Protein Sequence:NP_080013.1Re-query CCDS DB by Nucleotide ID:NM_025737Re-query CCDS DB by Protein ID:NP_080013Link to BLAST:NP_080013.1

Chromosomal Locations for CCDS 39520.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 73468647 73469564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGCATGCTTTGGACTCTATTGTGGGAAGACTCTATTGTTTAAAAATAGCTCAACTGAAATCTATGGAG
AGTGTGGGGCGTGCCCAAGAGGACAGAGAACAAATGACCAGAAGTACTGTCAGCCTTGCACGGACCCCCC
GGAACTTTATGACTGGCTTTACCTTGGCTTCATGGCGATGCTTCCTCTCGTTTCCCATTTGCTCTGCATT
CAATGGAATGCAAAGAATAGTAATTCCAGAGGTGTGTTTTTCCAGCAAGTCTCTGCGCTATTAGAATGCA
GCATGGCAGCTGTGGTCACATTACTTGTGAGCAATCCTGTCGGCACCCTTGTCATCCACTCATGTCGGGT
GCTGATGCTTTCAGATTGGTACACGATGCTCTACAATCCAAGTCCAGATTACATCACCACCGTGCACTGC
ACTCAGGAAGCCGTGTACCCTCTGTACACTATCGTGTTCGTTTATTACGCTTTCTGCTTAGTATTGATGC
TGCTGCTTCGACCACTACTGGTAAAGAAGATCCAGTGGCACCTATACGTGTCAAACCAGCTGGAAAGCAT
GTATGCGGCCCTCTACTTCTTCCCGGGTTTGACCGTGCTGCAAGCAGTTGCAGGAGGCCTCCTATATTAT
GCCTTCCCATACATTGTGTTGGTGGCATCTTTGGCTAATCTGGCTGTTTATCTGGTTTTTGCCAAAGTAG
AGAGCTACAGTGATCTGATAAAAAAGGACAGACTTCTCGTTCTCTTCAGCCAGTGGTTTCTTCATGCCTA
TGGCTTAATGGCACTCTCCAGGGGGCAGCAACTTGAGCAAGATCTGCTCCTTTTAACTTTGGTGCCTGCC
CCCACTCTTTTTTACTTTTTCACTATTAAATTTACCAAACCATCACGGATAATCATCGAAGGAACCAAAG
AACACTGA

Translation (305 aa):
MACFGLYCGKTLLFKNSSTEIYGECGACPRGQRTNDQKYCQPCTDPPELYDWLYLGFMAMLPLVSHLLCI
QWNAKNSNSRGVFFQQVSALLECSMAAVVTLLVSNPVGTLVIHSCRVLMLSDWYTMLYNPSPDYITTVHC
TQEAVYPLYTIVFVYYAFCLVLMLLLRPLLVKKIQWHLYVSNQLESMYAALYFFPGLTVLQAVAGGLLYY
AFPYIVLVASLANLAVYLVFAKVESYSDLIKKDRLLVLFSQWFLHAYGLMALSRGQQLEQDLLLLTLVPA
PTLFYFFTIKFTKPSRIIIEGTKEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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