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Report for CCDS27413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27413.1 Public Mus musculus 15 Sdc2 23 108 98 CCDS HistoryNCBI Gene:15529Re-query CCDS DB by CCDS ID:27413.1Re-query CCDS DB by GeneID:15529See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27413.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022871.6 ENSMUSP00000022871.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022871.6Link to Ensembl Protein Viewer:ENSMUSP00000022871.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000022871Re-query CCDS DB by Protein ID:ENSMUSP00000022871
Original member Current member NCBI NM_008304.2 NP_032330.1 Accepted alive Link to Nucleotide Sequence:NM_008304.2Link to Protein Sequence:NP_032330.1Re-query CCDS DB by Nucleotide ID:NM_008304Re-query CCDS DB by Protein ID:NP_032330Link to BLAST:NP_032330.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032330.1 202 P43407 202 100% 0 0

Chromosomal Locations for CCDS 27413.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 32921246 32921305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 33017102 33017213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 33023649 33023785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 33028047 33028182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 33032377 33032540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGCAGCGCGCGTGGATCCTGCTCACCTTGGGCTTGATGGCCTGTGTGTCCGCAGAGACGAGAACAGAGC
TGACATCCGATAAGGATATGTACCTTGACAATAGCTCCATTGAGGAAGCTTCAGGAGTATATCCTATTGA
TGATGATGACTATTCTTCTGCCTCAGGCTCAGGAGCTGATGAAGACATAGAGAGTCCAGTTCTGACAACA
TCCCAACTGATTCCAAGAATCCCACTCACTAGTGCTGCTTCCCCCAAAGTGGAAACCATGACGTTGAAGA
CACAAAGCATTACACCTGCTCAGACTGAGTCACCTGAAGAAACTGACAAGGAGGAAGTTGACATTTCTGA
GGCAGAAGAGAAGCTGGGCCCTGCTATAAAAAGCACAGATGTGTACACGGAGAAACATTCAGACAATCTG
TTTAAACGGACAGAAGTTCTAGCAGCCGTCATTGCTGGTGGTGTGATCGGCTTTCTCTTTGCCATTTTCC
TCATCCTGCTATTGGTGTACCGCATGCGGAAGAAAGATGAAGGAAGCTACGACCTTGGAGAACGCAAACC
ATCCAGCGCAGCTTACCAGAAGGCACCCACTAAGGAGTTTTATGCATAA

Translation (202 aa):
MQRAWILLTLGLMACVSAETRTELTSDKDMYLDNSSIEEASGVYPIDDDDYSSASGSGADEDIESPVLTT
SQLIPRIPLTSAASPKVETMTLKTQSITPAQTESPEETDKEEVDISEAEEKLGPAIKSTDVYTEKHSDNL
FKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERKPSSAAYQKAPTKEFYA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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