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Report for CCDS18125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18125.1 Public Mus musculus 4 Pax5 23 108 98 CCDS HistoryNCBI Gene:18507Re-query CCDS DB by CCDS ID:18125.1Re-query CCDS DB by GeneID:18507See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18125.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014174.13 ENSMUSP00000014174.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014174.13Link to Ensembl Protein Viewer:ENSMUSP00000014174.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000014174Re-query CCDS DB by Protein ID:ENSMUSP00000014174
Original member Current member NCBI NM_008782.3 NP_032808.1 Accepted alive Link to Nucleotide Sequence:NM_008782.3Link to Protein Sequence:NP_032808.1Re-query CCDS DB by Nucleotide ID:NM_008782Re-query CCDS DB by Protein ID:NP_032808Link to BLAST:NP_032808.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032808.1 391 Q02650 391 100% 0 0

Chromosomal Locations for CCDS 18125.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 44531506 44531582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44537420 44537506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44570002 44570103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44609715 44609844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44645548 44645723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44679440 44679568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44682669 44682733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44691835 44692032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44697522 44697687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44710363 44710408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGGATTTAGAGAAAAATTACCCGACTCCTCGGACCATCAGGACAGGACATGGAGGAGTGAATCAGCTTG
GGGGGGTTTTTGTGAATGGACGGCCACTCCCAGATGTAGTCCGCCAAAGGATAGTGGAACTTGCCCATCA
AGGTGTCAGGCCCTGCGACATCTCCAGGCAGCTTCGGGTCAGCCATGGTTGTGTCAGCAAAATTCTTGGC
AGGTATTATGAGACAGGAAGCATCAAGCCGGGGGTGATTGGAGGATCCAAACCAAAGGTTGCCACTCCCA
AAGTGGTGGAAAAAATCGCTGAGTACAAACGCCAAAACCCTACCATGTTTGCCTGGGAGATCAGGGACCG
GCTGTTGGCAGAGCGAGTCTGTGACAATGACACTGTGCCCAGCGTCAGCTCCATCAACAGGATCATTCGG
ACAAAAGTACAGCAGCCCCCCAATCAGCCGGTCCCAGCTTCCAGTCACAGCATAGTGTCTACAGGCTCCG
TGACGCAGGTGTCATCGGTGAGCACCGACTCCGCGGGCTCCTCATACTCCATCAGTGGCATCCTGGGCAT
CACGTCCCCCAGTGCCGACACCAACAAACGCAAGAGGGATGAAGGTATTCAGGAGTCTCCAGTGCCGAAT
GGCCACTCACTTCCGGGCCGGGACTTCCTCCGGAAGCAGATGCGGGGAGACCTGTTCACACAGCAGCAGC
TGGAGGTGCTGGACCGCGTGTTTGAGAGACAGCACTACTCTGACATCTTCACCACCACGGAACCCATCAA
GCCAGAACAGACCACAGAGTATTCAGCCATGGCTTCACTGGCTGGAGGCCTGGATGACATGAAAGCCAAC
TTGACGAGCCCCACCCCCGCTGACATCGGGAGCAGCGTTCCAGGCCCACAGTCCTACCCTATTGTCACAG
GCCGAGACTTGGCGAGCACAACCCTCCCGGGGTACCCTCCACACGTCCCCCCCGCTGGACAGGGCAGCTA
CTCTGCACCGACGCTGACAGGGATGGTGCCTGGGAGTGAATTTTCTGGAAGTCCCTACAGCCACCCTCAG
TATTCTTCCTACAATGATTCTTGGAGGTTCCCCAACCCAGGGCTGCTTGGCTCCCCATACTATTACAGCC
CTGCAGCCCGAGGAGCGGCCCCACCGGCCGCAGCCACCGCCTATGACCGTCACTGA

Translation (391 aa):
MDLEKNYPTPRTIRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG
RYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIR
TKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILGITSPSADTNKRKRDEGIQESPVPN
GHSLPGRDFLRKQMRGDLFTQQQLEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKAN
LTSPTPADIGSSVPGPQSYPIVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQ
YSSYNDSWRFPNPGLLGSPYYYSPAARGAAPPAAATAYDRH


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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