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Report for CCDS36086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36086.1 Public Mus musculus 10 Prim1 23 108 98 CCDS HistoryNCBI Gene:19075Re-query CCDS DB by CCDS ID:36086.1Re-query CCDS DB by GeneID:19075See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36086.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026461.7 ENSMUSP00000026461.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026461.7Link to Ensembl Protein Viewer:ENSMUSP00000026461.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026461Re-query CCDS DB by Protein ID:ENSMUSP00000026461
Original member Current member NCBI NM_008921.2 NP_032947.1 Accepted alive Link to Nucleotide Sequence:NM_008921.2Link to Protein Sequence:NP_032947.1Re-query CCDS DB by Nucleotide ID:NM_008921Re-query CCDS DB by Protein ID:NP_032947Link to BLAST:NP_032947.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032947.1 417 P20664 417 100% 0 0

Chromosomal Locations for CCDS 36086.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128015249 128015351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128015964 128016121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128017976 128018082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128018148 128018221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128020130 128020266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128021673 128021731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128022863 128022972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128023583 128023674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128023781 128023919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128026518 128026587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128027053 128027138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128029186 128029284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128029766 128029785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGGAGCCATTTGATCCTGCGGAGCTGCCGGAGCTACTCAAGCTTTATTACCGAAGGCTCTTTCCCTACG
CCCAGTACTATCGCTGGCTCAACTATGGCGGAGTGACAAAGAATTACTTTCAACACCGTGAATTTTCATT
CACACTGAAAGATGATATTTACATTCGCTACCAGTCCTTCAACAACCAGAGTGAACTGGAGAAGGAGATG
CAGAAAATGAATCCATATAAGATTGATATAGGCGCAGTATATTCTCACAGACCCAATCAACACAATACAG
TGAAGCTGGGAGCTTTCCAGGCCCAGGAGAAAGAACTGGTCTTTGACATCGACATGACAGACTACGATGA
CGTAAGGAGATGCTGCAGTTCTGCAGACATATGTTCCAAATGCTGGACTCTCATGACAATGGCCATGCGC
ATCATAGACCGGGCATTGAAGGAGGACTTTGGATTTAAGCACCGCCTCTGGGTCTATTCAGGAAGGAGAG
GTGTGCACTGTTGGGTCTGTGATGAATCCGTTCGAAAGCTGTCCTCTGCTGTGCGCTCCGGGATCGTGGA
GTACTTGAGTCTTGTAAAGGGTGGTCAAGATGTTAAAAAGAAAGTTCACCTAAATGAGAAAGTTCACCCT
TTTGTCAGAAAATCTATAAACATAATTAAAAAGTACTTTGAGGAATATGCCTTAGTCGGCCAAGATATTC
TTGAAAATAAAGAAAACTGGGATAAGATTTTAGCCCTTGTTCCTGAGACAATTCATGATGAGCTGCAAAG
AGGGTTCCAGAAGTTCCACAGTTCACCTCAGCGCTGGGAACACCTGAGGAAAGTGGCCAACTCATCTCAG
AATATGAAGAACGATAAGTGCGGCCCCTGGCTGGAGTGGGAGGTCATGCTCCAGTACTGTTTCCCACGCC
TGGATGTCAACGTCAGCAAGGGAGTCAATCACTTACTGAAGAGCCCTTTCAGTGTTCATCCCAAGACAGG
TCGGATTTCTGTGCCTATCGATTTTCATAAAGTGGATCAATTTGATCCGTTTACTGTCCCAACTATAAGT
GCCATCTGCCGGGAATTGGATATGGTTTCCACTCATGAGAAGGAAAAGGAGGAGAATGAAGCTGACAGCA
AACACAGAGTCAGAGGTTACAAGAAGACCAGTCTAGCACCGTATGTGAAAGTATTTGAACAGTTTCTTGA
AAACCTGGATAAATCCCGGAAAGGGGAACTTCTCAAGAAGAGCGATTTACAAAAAGATTTCTGA

Translation (417 aa):
MEPFDPAELPELLKLYYRRLFPYAQYYRWLNYGGVTKNYFQHREFSFTLKDDIYIRYQSFNNQSELEKEM
QKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICSKCWTLMTMAMR
IIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHLNEKVHP
FVRKSINIIKKYFEEYALVGQDILENKENWDKILALVPETIHDELQRGFQKFHSSPQRWEHLRKVANSSQ
NMKNDKCGPWLEWEVMLQYCFPRLDVNVSKGVNHLLKSPFSVHPKTGRISVPIDFHKVDQFDPFTVPTIS
AICRELDMVSTHEKEKEENEADSKHRVRGYKKTSLAPYVKVFEQFLENLDKSRKGELLKKSDLQKDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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