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Report for CCDS28104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28104.1 Public Mus musculus 16 Ppp1r2 23 108 98 CCDS HistoryNCBI Gene:66849Re-query CCDS DB by CCDS ID:28104.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28104.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060188.13 ENSMUSP00000060118.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060188.13Link to Ensembl Protein Viewer:ENSMUSP00000060118.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000060188Re-query CCDS DB by Protein ID:ENSMUSP00000060118
Original member Current member NCBI NM_025800.3 NP_080076.1 Accepted alive Link to Nucleotide Sequence:NM_025800.3Link to Protein Sequence:NP_080076.1Re-query CCDS DB by Nucleotide ID:NM_025800Re-query CCDS DB by Protein ID:NP_080076Link to BLAST:NP_080076.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080076.1 206 Q9DCL8 206 100% 0 0

Chromosomal Locations for CCDS 28104.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 31254687 31254733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31258337 31258504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31260574 31260668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31261230 31261307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31265305 31265412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31274846 31274970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGGCGGCCTCAACGGCCTCGCACCGGCCCATCAAAGGAATCCTGAAGAACAAGACCTCTGCGGCTTCCC
CCCCGGTGGTGCCCTCGGCCGAACAGCCCCGCCCGATCGTGGAAGAGGAACTGAGTAAGAAGTCTCAGAA
GTGGGATGAAATGAATATCCTGGCAACATATCATCCCGCTGACAAAGACTATGGCTTGATGAAAATAGAC
GAGCCAAACACCCCATATCACAATATGATAGGTGACGATGAAGACGCCTATAGTGATTCAGAAGGCAATG
AAGTCATGACTCCAGATATCTTAGCTAAGAAATTAGCTGCTGCTGAAGGCTCAGAGCCAAAGTATCGGAC
TCGGGAGCAAGAAAGTAGTGGAGAGGAAGATAATGACCTCTCCCCTGAGGAGCGAGAAAAGAAGCGACAG
TTTGAAATGAAAAGGAAGCTTCATTACAATGAAGGACTCAATATTAAGTTAGCCAGACAGTTAATTTCAA
AAGACCTACATGATGATGATGAAGATGAAGAAATGGCAGAGACTGCAGATGGAGACAGCATGAATGTTGA
AGAGTCAAGTCAAGGATCTACTACAAGTGACCATCTGCAACACAAATCACAAAGTTCATAA

Translation (206 aa):
MAASTASHRPIKGILKNKTSAASPPVVPSAEQPRPIVEEELSKKSQKWDEMNILATYHPADKDYGLMKID
EPNTPYHNMIGDDEDAYSDSEGNEVMTPDILAKKLAAAEGSEPKYRTREQESSGEEDNDLSPEEREKKRQ
FEMKRKLHYNEGLNIKLARQLISKDLHDDDEDEEMAETADGDSMNVEESSQGSTTSDHLQHKSQSS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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