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Report for CCDS15240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15240.1 Public Mus musculus 1 Ddx18 23 108 98 CCDS HistoryNCBI Gene:66942Re-query CCDS DB by CCDS ID:15240.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15240.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001724.11 ENSMUSP00000001724.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001724.11Link to Ensembl Protein Viewer:ENSMUSP00000001724.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000001724Re-query CCDS DB by Protein ID:ENSMUSP00000001724
Original member Current member NCBI NM_025860.3 NP_080136.2 Accepted alive Link to Nucleotide Sequence:NM_025860.3Link to Protein Sequence:NP_080136.2Re-query CCDS DB by Nucleotide ID:NM_025860Re-query CCDS DB by Protein ID:NP_080136Link to BLAST:NP_080136.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080136.2 660 Q8K363 660 100% 0 0

Chromosomal Locations for CCDS 15240.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 121553996 121554138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121555216 121555393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121555691 121555747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121557405 121557518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121558411 121558563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121559166 121559327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121560132 121560271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121561281 121561595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121561690 121561790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121562059 121562194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121564493 121564603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121565881 121566168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121567791 121567875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1983 nt):
ATGTCGCAGTTACAGATGAAACTCCTGCGCAGGAAGATCGAGAAGCGGAATGCCAAGCTGCGGCAGCGAA
ACCTGAAGCTGCAAGAAACATCAGACACAAGCCTGTCCCAACCTCAAAATGGAGATGTGCCTAAAGAAAC
AGGAAAAGGTGGAAAAGTGAAAAAGGCCCTGAAACGTTCTGTGCCTGTGGACTCAGCAGAAGCACAAAGT
GGAGGCATGCCTGAGGAGACCTTGGAAAATGGCAAAGTTAAAAAGTCACCCCAGAAACTCACAACTTTAG
CCAACGGAGAAGCAGCACCAACACCACCTCCTGATTCAGAAGTAAAAAAGAAAAAGAAGAAAAAGAGGAA
AATGGCAAATGATGCCGGGCCTGATACAAAAAAAGCGAAAACTGAAGAAAGTGCTGAGGCTTGTGAGGAA
CCAGAAGATGATGTGAAAAAGGCAGATGACAGCGAGGTGCCCAGCCTGCCCCTAGGACTGACAGGTGCTT
TTGAGGACACTTCATTTGCTTCCTTGTCTAATCTCGTCAATGAGAACACCCTGAAGGCCATAGAAGAAAT
GGGCTTCAAGCGCATGACGGAGATCCAGCATAAAAGTATCAGGCCACTTCTGGAAGGCAGGGACCTTCTG
GCGGCTGCGAAAACCGGCAGTGGCAAAACCCTCGCTTTCCTCATCCCTGTGATCGAGCTCATTGTCAAGT
TGAAGTTCATGCCCAGGAATGGAACAGGAGTCCTGATTCTCTCTCCTACCAGAGAACTGGCCATGCAGAC
CTTTGGTGTTCTCAAGGAGCTGATGACGCACCACGTTCACACGTATGGGCTGATCATGGGCGGCAGCAAC
AGGTCTGCTGAAGTGCAGAAGCTCCTCAATGGGATCAACATCATCGTGGCCACGCCCGGCCGGCTCCTGG
ACCACATGCAGAACACGCCAGGGTTTATGTACAAGAACCTGCAGTGTCTGGTTATTGATGAGGCTGACCG
TATCTTGGATGTTGGGTTTGAAGAAGAATTAAAGCAAATTATTAAACTTTTGCCAGCCCGTAGGCAAACC
ATGCTCTTTTCTGCCACACAAACTCGAAAAGTTGAAGACTTGGCAAGAATTTCTCTGAAAAAGGAGCCTT
TGTACGTGGGTGTTGATGACGACAAAGAGGTTGCCACAGTGGATGGCCTTGAGCAGGGCTATGTTGTTTG
TCCCTCTGAGAAGAGGTTCCTTCTGCTTTTCACATTCCTTAAGAAGAACCGGAAGAAGAAAGTGATGGTC
TTCTTTTCATCTTGTATGTCTGTGAAATACCACTATGAGCTGTTGAACTACATTGACCTTCCCGTCTTGG
CCATCCATGGAAAGCAAAAGCAAAATAAGCGAACAACCACGTTTTTCCAGTTCTGCAACGCGGATTCAGG
AATACTGCTGTGTACTGATGTGGCAGCCAGAGGGCTGGACATCCCCGAAGTGGACTGGATTGTTCAGTAC
GACCCTCCCGATGACCCCAAGGAATACATTCATCGTGTTGGTAGAACAGCCAGGGGCCTGAATGGAAGAG
GGCACGCCCTGCTCATCCTGCGCCCTGAAGAGTTGGGTTTCCTTCGTTACTTGAAACAGTCCAAGGTTCC
ATTGAATCAGTTTGACTTCTCCTGGTCTAAAGTTTCTGATATCCAGTCTCAGCTGGAAAAACTGATCGAA
AAGAACTACTTTCTCCACAAGTCTGCCCAGGAAGCATACAAATCCTACATAAGAGCATATGACTCTCACT
CTCTCAAGCAGATCTTCAACGTGAACAACTTAAATCTGCCTCAGGTTGCTCTGTCTTTTGGTTTTAAGGT
CCCTCCTTTTGTTGATCTGAATGTGAGCAGCCATGATGGCAAGCTTAAGAAGAGAGGCGGTGGTGGCGGA
TTCGGCTACCAGAAAACAAAGAAAGTGGAGAAGTCCAAGATCTTTAAACACATCAGTAAGAAGCCAGCAG
ACCGCAGGCAGTTCTCACACTGA

Translation (660 aa):
MSQLQMKLLRRKIEKRNAKLRQRNLKLQETSDTSLSQPQNGDVPKETGKGGKVKKALKRSVPVDSAEAQS
GGMPEETLENGKVKKSPQKLTTLANGEAAPTPPPDSEVKKKKKKKRKMANDAGPDTKKAKTEESAEACEE
PEDDVKKADDSEVPSLPLGLTGAFEDTSFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLL
AAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSN
RSAEVQKLLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQT
MLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMV
FFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQY
DPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSKVPLNQFDFSWSKVSDIQSQLEKLIE
KNYFLHKSAQEAYKSYIRAYDSHSLKQIFNVNNLNLPQVALSFGFKVPPFVDLNVSSHDGKLKKRGGGGG
FGYQKTKKVEKSKIFKHISKKPADRRQFSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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