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Report for CCDS16926.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16926.1 Public Mus musculus 2 Bpifa5 23 108 98 CCDS HistoryNCBI Gene:67135Re-query CCDS DB by CCDS ID:16926.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16926.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028986.2 ENSMUSP00000028986.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028986.2Link to Ensembl Protein Viewer:ENSMUSP00000028986.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028986Re-query CCDS DB by Protein ID:ENSMUSP00000028986
Original member Current member NCBI NM_025990.4 NP_080266.2 Accepted alive Link to Nucleotide Sequence:NM_025990.4Link to Protein Sequence:NP_080266.2Re-query CCDS DB by Nucleotide ID:NM_025990Re-query CCDS DB by Protein ID:NP_080266Link to BLAST:NP_080266.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080266.2 270 Q9CQX3 270 100% 0 0

Chromosomal Locations for CCDS 16926.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 154163500 154163713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154164108 154164264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154165511 154165618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154165919 154166068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154166910 154166988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154167248 154167311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154167651 154167691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGTTTCTAGCTGGGAGCTTCATTGTCCTCTGTGGGCTGCTGGCCCAGAGCACAGCCCAGCTGGCAGGAC
TGCCCTATCCCCTGGGCCAAGATCTGCCCATGTCCATGGGTCACTGCCGGTCCTTGCACGTGGGCCAGAC
CCTGCCCTACTACGGAGTGACTCCAGTCGTGTCTACATATCCTTCAGACCATCTTGATAGAAACTTCAGA
GATGCTTTCAGACACGGCCTGCTTTCCGGAGGGATTCTGAGCTTTCTGGAACACATACCACTCTTAAACT
ATGTGAGACCTACAGGAAGCAATGCCGGTGGCCTGGTTGGTGTGCTTGGAAAAGTGATTTCATCAATCCC
TCTCTTGAACAACATCCTTGACATAAGAGTCACTAATCCCCAGCTACTGGAAATTGGTCTTGTGCAGAGC
TATGATTTCCACCGCCTCTATGTCACCATCCCACTGGGCTTTGATCTCAGAGTGAACACACTGGTGGTTG
GAAGTCTGTTGGAGCTATCTGTGAAGCTAGATGTCACTGCAGAAGTCTATGCTGTGAGAGATTCTTATGG
GAGGAGTCGCCTGGTCATTGGTGACTGTATATACCCTCCTGGCAGCTTGCGTATCTCCTTGCTTAATAGA
CTTGGTCCCCTGCAAAACCTTATAGACAGCCTCACAGACATCTTGACTAGAGTCATTCCTGGCCTGGTGC
AGGGTGTGGTGTGTCCTCTGGTCAATGGGGTTCTCAGCCTCTTGGACGTCACCCTAGCACATGATGTTGC
TGATGCGCTGCTGCGTGGAGTACAGTTTGTCATTAAGACCTAA

Translation (270 aa):
MFLAGSFIVLCGLLAQSTAQLAGLPYPLGQDLPMSMGHCRSLHVGQTLPYYGVTPVVSTYPSDHLDRNFR
DAFRHGLLSGGILSFLEHIPLLNYVRPTGSNAGGLVGVLGKVISSIPLLNNILDIRVTNPQLLEIGLVQS
YDFHRLYVTIPLGFDLRVNTLVVGSLLELSVKLDVTAEVYAVRDSYGRSRLVIGDCIYPPGSLRISLLNR
LGPLQNLIDSLTDILTRVIPGLVQGVVCPLVNGVLSLLDVTLAHDVADALLRGVQFVIKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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