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Report for CCDS23894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23894.1 Public Mus musculus 10 Pbld2 23 108 98 CCDS HistoryNCBI Gene:67307Re-query CCDS DB by CCDS ID:23894.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23894.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020262.4 ENSMUSP00000020262.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020262.4Link to Ensembl Protein Viewer:ENSMUSP00000020262.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020262Re-query CCDS DB by Protein ID:ENSMUSP00000020262
Original member NCBI NM_026085.2 NP_080361.1 Updated not alive Link to Nucleotide Sequence:NM_026085.2Link to Protein Sequence:NP_080361.1Re-query CCDS DB by Nucleotide ID:NM_026085Re-query CCDS DB by Protein ID:NP_080361
Current member NCBI NM_026085.3 NP_080361.1 Accepted alive Link to Nucleotide Sequence:NM_026085.3Link to Protein Sequence:NP_080361.1Re-query CCDS DB by Nucleotide ID:NM_026085Re-query CCDS DB by Protein ID:NP_080361Link to BLAST:NP_080361.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080361.1 288 Q9CXN7 288 100% 0 0

Chromosomal Locations for CCDS 23894.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 63039149 63039232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63047468 63047567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63047942 63048040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63052201 63052310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63052429 63052458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63053864 63053952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63054327 63054505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63056779 63056841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63057641 63057753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGAAGCTCCCAATCTTCATAGCAGATGCGTTCACTGCGACAGCTTTCCGGGGCAATCCTGCCGCAGTCT
GCCTCCTGGAGCGCACATTGGATGAAGATGCTCATCAGGACATTGCAAGGGAAATGAACCTCTCTGAAAC
CGCTTTTGTCCGCAAACTGCAACCAACTGATGACTTCACACAAAGTTCCCGTTTTGGGCTGAGGTGGTTT
ACCCCAGAGGCCGAGTTCCCCTTGTGTGGCCACGCCACGCTGGCTTCTGCAGCTGTGCTGTTTCAAAAAA
GAAAGAACACGAACAGCACCCTGACCTTTGTCACAATGAGCGGGGAGCTAAAGGCCAGAAGAGAAGAAGA
TGGGATCGTCCTGGACTTTCCTGTCTACCCAACCTTCCCCCAGGACTTCCATGAAGTTGAAGACTTGATA
AAGGCAGCCATAGGTGACACCCTGGTCCAGGACATCCGGTACTCTCCAGATACCAAAAACCTCCTGGTCC
GGCTCAGCGATTCTTATGACAGGTCCTTTCTAGAGAGCCTGAAGGTGAACACAGAGCCTCTGCCTGCAAT
TGAGAAGACAGGGAAGGTGAGAGGCCTCATCCTCACTGTCAAAGGAGAGCCTGGGGGGCAGACAGCCCTG
TATGACTTCTACTCCAGATGCTTCGCGCCGTGGGTTGGTGTGGCTGAAGACCCGGTGACAGGGTCCACCC
ACACTCTTCTTGGCCCCTACTGGTCTGAGGAGCTGGGGAAGAAGGAAATGCGAGCCTTTCAGTGTTCCCG
CCGAGGAGGGGAGCTGGACATTAACCTGCGACCTGATGGGCGCGTTGACATAAAGGGCGGAGCTGTTATT
GTCTTGGAGGGCACGCTGACCGCCTAG

Translation (288 aa):
MKLPIFIADAFTATAFRGNPAAVCLLERTLDEDAHQDIAREMNLSETAFVRKLQPTDDFTQSSRFGLRWF
TPEAEFPLCGHATLASAAVLFQKRKNTNSTLTFVTMSGELKARREEDGIVLDFPVYPTFPQDFHEVEDLI
KAAIGDTLVQDIRYSPDTKNLLVRLSDSYDRSFLESLKVNTEPLPAIEKTGKVRGLILTVKGEPGGQTAL
YDFYSRCFAPWVGVAEDPVTGSTHTLLGPYWSEELGKKEMRAFQCSRRGGELDINLRPDGRVDIKGGAVI
VLEGTLTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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