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Report for CCDS21147.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21147.1 Public Mus musculus 7 Gpatch1 23 108 98 CCDS HistoryNCBI Gene:67471Re-query CCDS DB by CCDS ID:21147.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21147.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079693.11 ENSMUSP00000078632.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079693.11Link to Ensembl Protein Viewer:ENSMUSP00000078632.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079693Re-query CCDS DB by Protein ID:ENSMUSP00000078632
Original member Current member NCBI NM_026181.1 NP_080457.1 Accepted alive Link to Nucleotide Sequence:NM_026181.1Link to Protein Sequence:NP_080457.1Re-query CCDS DB by Nucleotide ID:NM_026181Re-query CCDS DB by Protein ID:NP_080457Link to BLAST:NP_080457.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080457.1 930 Q9DBM1 930 100% 0 0

Chromosomal Locations for CCDS 21147.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 35276781 35276811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35281332 35281480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35283571 35283668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35284716 35284823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35287123 35287336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35288517 35288680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35289040 35289176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35291726 35291853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35293655 35293833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35295255 35295551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35297484 35297688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35299221 35299300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35301578 35301725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35303229 35303471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35305930 35305988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35307189 35307286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35308179 35308339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35309301 35309386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35310440 35310574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35318341 35318413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2793 nt):
ATGGCGGCGCTGGACAGTGACAGCGACGAGGATCTGATCAGCTATGGAACGGGCCTGGAGCCTCTGGACG
AAGGTGAAAGACCAAAGAAACCCATTCCTCTACAAGACCAGACTGTCAGAGATGAGAAAGGAAGGTACAA
GCGCTTCCACGGAGCCTTTAGTGGTGGTTTCTCTGCTGGTTACTTCAATACCGTCGGCTCAAAGGAAGGA
TGGACACCCTCTACCTTTGTGTCTTCAAGACAGAACAGGGCGGACAAATCTGCTCTTGGACCTGAAGATT
TTATGGACGAAGAGGATCTTAGTGAATTCGGGATAGCACCTAAAGCAATTGTTACCACGGATGATTTTGC
TTCCAAAACCAAAGACAGAATCCGGGAGAAGGCCAGGCAGCTGGCCGCTGCTGCAGCCCCTATTCCCGGC
GCCACGCTGCTTGATGACCTCATCACACCGGCAAAATTGTCTGTTGGCTTTGAATTGTTAAGAAAAATGG
GTTGGAAGGAAGGGCAAGGAGTCGGCCCTCGGGTGAAGAGAAAGGCGCGCCGACAGAAACCAGATCCTGG
TGTGAAGATCTATGGCTGTGCATTGCCGCCTGGAGGCTCTGAAGAGTCTGAGGATGAAGATGATGACTAC
CTGCCTGACAATGTGACTTTTGCTCCTAAAGACGTCATGCCTGTGGATTTTACACCTAAAGATAATGTAC
ATGGGTTGGCCTACAAGGGCCTGGACCCCCACCAAGCATTGTTTGGAATGCCAGGAGAACACCTGAATCT
TTTTGGTGGCGCATCTGAGGGGACCAGCCATCTTCTTGGAGATGTTGGACTGAGTAAAGGAAGAAAACTG
GGCATTTCTGGCCAGGCTTTTGGTGTAGGTGCCCTGGAAGAGGAAGATGATGACATCTACGCCACAGAAA
CTCTATCCAAGTATGACACTGTGCTGAAGGACGAGGAGCCTGGAGATGGCCTCTATGGCTGGACAGCTCC
CAAACAATACAAAAATCAGAAAGAACCCGAGAGAGATCTTCGATATGTTGGCAAAATTTTGGAAGGATTT
TCCTTGGCTTCTAAACCTTTATCTTCAAAGAAAATTTACCCGCCCCCTCAGTTGCCCAGAGACTACCGAC
CGGTGCATTATTTCAGACCTGTGGTCGCCGCAACAGCCGAGAATGCTCACGTACTTCAGGTGTTATCAGA
GTCATCTGGGAAAGCAGGGCAGGACGTGGGGACACACAGTAGGCATCAACTCAATGCCTCCAAGCGGGGG
GAGTTGCTAGGAGAGATGCCTATTCAAGGGTCAGCTACTTCAGTGTTGGAGTTTCTGTCTCAAAAAGACA
AAGAGAGAATTAAAGAAGTGAAGCAGGCAACTGACCTGAAAGCCGCCCAAGCCAAGGCCAGGAGTCTGGC
CCAGAGTGCTTCAAGCAGCAGAGCGCAGGCGTCCACACCAGACCTGGGCCACAGCTCATGGCACCTGGCC
CTGGGCGGAGGGACAGTCACCACCAGAGCCAACAACTTCAAGCCTTTTGCCAAAGATCCAGAAAAGCAGA
GACGATACGAAGAGTTCTTAGTACACATGAAGAAGGGTCAGAAAGATGCTCTGGAACGATGCCTGGACCC
CAGCATGACCGAGTGGGAGCGAAGCCGAGAGCGGGAAGAGTTTGCCCGGGCAGCCCAGCTCTATGTGTCC
TCCAACTCCACCCTGTCCTCCAGGTTCACTCACGCCAAGGAGGAGGAGGATTCAGATCAGGTCGAAGTCC
CTCGGGACCAAGAGAACGATGTCAGTGACAAGCAGTCGGCTGTGAAGATGAAGATGTTCGGGAAGCTCAC
CCGAGACACGTTTGAGTGGCACCCCGACAAGCTTCTGTGTAAGAGGTTTAACGTCCCGGACCCTTATCCA
GGCTCAACTTTAGTTGGCTTACCCAGAGTGAAGAGGGATAAATACTCAGTCTTCAACTTCCTGACGCTCC
CAGAGCCTGCCCCTCTGCCCACAGCTCCAGTACCAAGTGAAAAAGCCCCGCAGCAACGGGGTTCAGACAA
ATCCAGGAAACCATCACGATGGGACACATCCAAACAGGAGAAGAAAGAGGATTCCATTAGCGAGTTTTTA
AGTCAAGCTAGATCAAAAGTTGGACCTCCAAAACAAGAATCCAGTGCCTTAGGAAGCAAAGAGGAACAGG
CCCCAGAGCCACGCCCAGACACGACTGTAGACAAAGCTGTGGATGCACAGACGGACGGGGAAGGTAGCCG
CCCTTCCATGGATTTATTCAAAGCCATCTTCGCCAGTTCCTCTGATGAAAAGTCCTCATCTTCGGAGGAG
GAGCAAGATGATAGTGAGGACAGTCAAGAGCACACTGAGGAGGCCAGCCTTAAAGGCTCTCAGGAGGCTG
CTGCTGGGGAGACCTCTGTGGTCCTTGCTGCTGAGCCGGAGCCTTGTGAGCCTGCAACCCCCTTCCCCAT
CCAAAAGGCACAGATTGACGAACGGGAAGAGTTCGGGCCTCGGCTGCCTCCTGTCTTCTGCCCCAACTCT
CGCCAGAAACTCGAGATACCTCAAAAAGAGAAACCCAAGAAGAGCAAAGAAAGACACAAGAGCAAAAAGG
AACACAGAAGAAAGAGAGAGAAGAAAAAGAAACATAAGAAACACAAACACAAAAGTAAGCAAAAGAATAA
GAAATCGGAAAAAAATAGCAGTTCTGAGAGTACAGACAGCAGTGACAGTGGGAGCGATGACGGAGGGCCA
GCAGAGCTGTCCCCTCAGGAGCTGCTGAGAAGACTGAAGTGTCTCCCCCTAAGAAGGCAATAA

Translation (930 aa):
MAALDSDSDEDLISYGTGLEPLDEGERPKKPIPLQDQTVRDEKGRYKRFHGAFSGGFSAGYFNTVGSKEG
WTPSTFVSSRQNRADKSALGPEDFMDEEDLSEFGIAPKAIVTTDDFASKTKDRIREKARQLAAAAAPIPG
ATLLDDLITPAKLSVGFELLRKMGWKEGQGVGPRVKRKARRQKPDPGVKIYGCALPPGGSEESEDEDDDY
LPDNVTFAPKDVMPVDFTPKDNVHGLAYKGLDPHQALFGMPGEHLNLFGGASEGTSHLLGDVGLSKGRKL
GISGQAFGVGALEEEDDDIYATETLSKYDTVLKDEEPGDGLYGWTAPKQYKNQKEPERDLRYVGKILEGF
SLASKPLSSKKIYPPPQLPRDYRPVHYFRPVVAATAENAHVLQVLSESSGKAGQDVGTHSRHQLNASKRG
ELLGEMPIQGSATSVLEFLSQKDKERIKEVKQATDLKAAQAKARSLAQSASSSRAQASTPDLGHSSWHLA
LGGGTVTTRANNFKPFAKDPEKQRRYEEFLVHMKKGQKDALERCLDPSMTEWERSREREEFARAAQLYVS
SNSTLSSRFTHAKEEEDSDQVEVPRDQENDVSDKQSAVKMKMFGKLTRDTFEWHPDKLLCKRFNVPDPYP
GSTLVGLPRVKRDKYSVFNFLTLPEPAPLPTAPVPSEKAPQQRGSDKSRKPSRWDTSKQEKKEDSISEFL
SQARSKVGPPKQESSALGSKEEQAPEPRPDTTVDKAVDAQTDGEGSRPSMDLFKAIFASSSDEKSSSSEE
EQDDSEDSQEHTEEASLKGSQEAAAGETSVVLAAEPEPCEPATPFPIQKAQIDEREEFGPRLPPVFCPNS
RQKLEIPQKEKPKKSKERHKSKKEHRRKREKKKKHKKHKHKSKQKNKKSEKNSSSESTDSSDSGSDDGGP
AELSPQELLRRLKCLPLRRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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