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Report for CCDS3288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3288.1 Public Homo sapiens 3 SST 24 110 108 CCDS HistoryNCBI Gene:6750Re-query CCDS DB by CCDS ID:3288.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3288.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000287641.4 ENSP00000287641.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000287641.4Link to Ensembl Protein Viewer:ENSP00000287641.3Re-query CCDS DB by Nucleotide ID:ENST00000287641Re-query CCDS DB by Protein ID:ENSP00000287641
Original member Current member NCBI NM_001048.4 NP_001039.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001048.4Link to Protein Sequence:NP_001039.1Re-query CCDS DB by Nucleotide ID:NM_001048Re-query CCDS DB by Protein ID:NP_001039Link to BLAST:NP_001039.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001039.1 116 P61278 116 100% 0 0

Chromosomal Locations for CCDS 3288.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 187669065 187669277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 187670154 187670291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (351 nt):
ATGCTGTCCTGCCGCCTCCAGTGCGCGCTGGCTGCGCTGTCCATCGTCCTGGCCCTGGGCTGTGTCACCG
GC
GCTCCCTCGGACCCCAGACTCCGTCAGTTTCTGCAGAAGTCCCTGGCTGCTGCCGCGGGGAAGCAGGA
A
CTGGCCAAGTACTTCTTGGCAGAGCTGCTGTCTGAACCCAACCAGACGGAGAATGATGCCCTGGAACCT
GAA
GATCTGTCCCAGGCTGCTGAGCAGGATGAAATGAGGCTTGAGCTGCAGAGATCTGCTAACTCAAACC
CG
GCTATGGCACCCCGAGAACGCAAAGCTGGCTGCAAGAATTTCTTCTGGAAGACTTTCACATCCTGTTA
G


Translation (116 aa):
MLSCRLQCALAALSIVLALGCVTGAPSDPRLRQFLQKSLAAAAGKQELAKYFLAELLSEPNQTENDALEP
E
DLSQAAEQDEMRLELQRSANSNPAMAPRERKAGCKNFFWKTFTSC




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser