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Report for CCDS26406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26406.1 Public Mus musculus 13 Prl7c1 23 108 98 CCDS HistoryNCBI Gene:67505Re-query CCDS DB by CCDS ID:26406.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26406.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072943.4 ENSMUSP00000072712.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072943.4Link to Ensembl Protein Viewer:ENSMUSP00000072712.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000072943Re-query CCDS DB by Protein ID:ENSMUSP00000072712
Original member Current member NCBI NM_026206.3 NP_080482.1 Accepted alive Link to Nucleotide Sequence:NM_026206.3Link to Protein Sequence:NP_080482.1Re-query CCDS DB by Nucleotide ID:NM_026206Re-query CCDS DB by Protein ID:NP_080482Link to BLAST:NP_080482.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080482.1 251 Q9CRB5 251 100% 0 0

Chromosomal Locations for CCDS 26406.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27773700 27773918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27774508 27774687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27776201 27776308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27778074 27778112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27778809 27778987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27780719 27780749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGCTGCTGTCTTTGACTCATCCATCATTCTTAGCAATGCTCCCAATGTTGTTGATGTCAAACCTACTCC
AGTGGGAGGGTGTGACTTCTGCTTCCATTCACCACATTGAGGATGACTATGGTGAGGCGTACCTCAAAGA
CTTGTTTGATCAAGCCATCAAACTCTCAAATGACACCATGGCTCTCACTATAGAAATGCGCATGATATTT
TTCTCTGATGGCTTCTCCTCAAATATGTTCAGAAAAATTGTATTGGATTTTCTCAAGGACCATAAGCACA
TGATTGAGACTCTCAACAGCTGCCACACATTTTCCCTCAGTGTTCCAGAAACCTTGGAGGAAGCCAGAAA
GATCTCACTTGAAGACTTCCTGAAAATTATAGTCAGCATATTGAATTCCTGGAATAAACCACTGTACCAC
CTAGAGACTGAACTCCACTGTATGAAAGGTGCCCCTGATGCAATTTTAATAAGAGCCAACGCCATCAGGA
CCCTAAACAGAGAACTTCTAGAGACTATCCTGATGATACTCAGCAGGGTTCATCCTGGAATGGAGGAGAA
TACTGACTACCCTTTATGGACAGATCTGGCATCCTTACAGGCAACTAACAAAGAACGTCAATTTTTTGCT
CTTTATAAATTGTTTTACTGTCTGCGTGTTGACACATTTACAGTTGACCATTATCTCAAGTACTTGATGT
GTATGCTTTATAGTGATGATATCTGCACCTCTGTAAAGTTTTATGAAGATCCTTGA

Translation (251 aa):
MLLSLTHPSFLAMLPMLLMSNLLQWEGVTSASIHHIEDDYGEAYLKDLFDQAIKLSNDTMALTIEMRMIF
FSDGFSSNMFRKIVLDFLKDHKHMIETLNSCHTFSLSVPETLEEARKISLEDFLKIIVSILNSWNKPLYH
LETELHCMKGAPDAILIRANAIRTLNRELLETILMILSRVHPGMEENTDYPLWTDLASLQATNKERQFFA
LYKLFYCLRVDTFTVDHYLKYLMCMLYSDDICTSVKFYEDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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