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Report for CCDS48735.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48735.1 Public Mus musculus 10 Tespa1 23 108 98 CCDS HistoryNCBI Gene:67596Re-query CCDS DB by CCDS ID:48735.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48735.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042586.9 ENSMUSP00000047284.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042586.9Link to Ensembl Protein Viewer:ENSMUSP00000047284.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000042586Re-query CCDS DB by Protein ID:ENSMUSP00000047284
Original member NCBI NM_183264.4 NP_899087.2 Updated not alive Link to Nucleotide Sequence:NM_183264.4Link to Protein Sequence:NP_899087.2Re-query CCDS DB by Nucleotide ID:NM_183264Re-query CCDS DB by Protein ID:NP_899087
Current member NCBI NM_183264.5 NP_899087.2 Accepted alive Link to Nucleotide Sequence:NM_183264.5Link to Protein Sequence:NP_899087.2Re-query CCDS DB by Nucleotide ID:NM_183264Re-query CCDS DB by Protein ID:NP_899087Link to BLAST:NP_899087.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899087.2 458 Q3U132-1 458 100% 0 0

Chromosomal Locations for CCDS 48735.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 130347188 130347350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130348215 130348257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130354712 130354767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130355451 130355504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130356318 130356354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130356804 130356902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130360647 130360855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 130361772 130362487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGGAGGCATCGGTACTGAGCCCCACATCCTGGGAGAAACGAAGGGCCTGGTTACGACAGAGTCGTAACT
GGCAAACCCAGGTCCTGGAAGAGGAAGCAGCAGCAGCTCTTCAGGATGCACTGGATCCCGAGCCTTCTAG
CCTGGATGATGTTTTCCAGGAAGGGAATCCAATCAATAAGATTGAGGACTGGCTGCAGGGCTGTGGTTGT
AGAGACACTGAAGAGGGCCTTTCTGAAGAATCAGGGCAATCTAACTACAGTGGATATTCTAGCCATGGGA
CAAGCTTTGAAGATGACTTGAGTCTTGGAGCAGAGGCCACATTACTGTCTACCAATGGAAACCTCTTCTC
TAGGAATTTCCTCCAGACACCCAGGCTTTGCCAGTTACTTGATCTTGGCTCTAGTTTGGCTTCCAGCAGC
ATGACTGGTGGAACCAACAAAACCAGTTCAAGCATCTCAGAGATTCTGGACCAGGTACAAGAAGATGCAG
AAGATATTCTTTTCAGCCTGGGCTTCGGGCACGAGAACCACAAAGACACATCTCGTATCCCTGCAAGATT
TTTCAGCAACCCTTCTCAGGCCAAGGGCATTAACTTTCAGCTCTTCCTGAAGTCTCAGGTGCAAAGGATG
GAGATGGAGGATCCCTGCCTGATGCTGGCCAGCCGGTTTAAGCAGGTGCAGACGCTGGCTGTCACTGCTG
ATGCTTTCTTCTGTCTCTACTCCTATGTGTCTAAGACACCTGTCCAAAAGTTCACACCATCCAACATGTT
CTGGAATTTCGACCCAACGGATGTGCCATCCATCAGGATTCTGGCTCCAGAGCCTGAACCCTACTCACCC
AGAGAACGTCTCAGGAGAGCAATCTCAAAAATGTGCCTGTATACAGGTTCCCGAGATCGGCTATCATCAT
CTTACAACAACCCCAAAAAGAACAGTTTGGATCAAATTGTGTGGGAAGTGATGGACAGAGTGAAAGGAGA
GAAGATCCAGCAAGACCCTGAGCATAGGCAAGCCCTTGGGGAAGAGTCTGTTCCCCCAATACAAAATACA
AATCCATCTACTTCTTCCCTTCCATGTGTTTCCTACCCTAAAGAAGAAACACAGGGAGACATGTGCCATG
CTCATGCTCTAGCAAGACCAGGTCCACAGTACCACATAAACTCTACACAGGTAAGGAGACAGCTGTGGGT
TCTACAGGACATTAATGAGAAGCCACGTTCAGCTGAGAATGAGAGTCCATGGGAAAGAAAAAGCAAAGCA
AGAAAGAATCTGTTTCAAAGGGTTCCTGTGGACAAGAATATTAAGTCATTGAACTTGCCCACCATCCAGC
AGAAACAAAACCAGGGACAAGCCAGACATGAGCTGACCAATCTTTAA

Translation (458 aa):
MEASVLSPTSWEKRRAWLRQSRNWQTQVLEEEAAAALQDALDPEPSSLDDVFQEGNPINKIEDWLQGCGC
RDTEEGLSEESGQSNYSGYSSHGTSFEDDLSLGAEATLLSTNGNLFSRNFLQTPRLCQLLDLGSSLASSS
MTGGTNKTSSSISEILDQVQEDAEDILFSLGFGHENHKDTSRIPARFFSNPSQAKGINFQLFLKSQVQRM
EMEDPCLMLASRFKQVQTLAVTADAFFCLYSYVSKTPVQKFTPSNMFWNFDPTDVPSIRILAPEPEPYSP
RERLRRAISKMCLYTGSRDRLSSSYNNPKKNSLDQIVWEVMDRVKGEKIQQDPEHRQALGEESVPPIQNT
NPSTSSLPCVSYPKEETQGDMCHAHALARPGPQYHINSTQVRRQLWVLQDINEKPRSAENESPWERKSKA
RKNLFQRVPVDKNIKSLNLPTIQQKQNQGQARHELTNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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