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Report for CCDS48985.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48985.1 Public Mus musculus 11 Prpsap1 23 108 98 CCDS HistoryNCBI Gene:67763Re-query CCDS DB by CCDS ID:48985.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48985.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106391.7 ENSMUSP00000101999.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106391.7Link to Ensembl Protein Viewer:ENSMUSP00000101999.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106391Re-query CCDS DB by Protein ID:ENSMUSP00000101999
Original member NCBI NM_026364.1 NP_080640.1 Updated not alive Link to Nucleotide Sequence:NM_026364.1Link to Protein Sequence:NP_080640.1Re-query CCDS DB by Nucleotide ID:NM_026364Re-query CCDS DB by Protein ID:NP_080640
Current member NCBI NM_026364.2 NP_080640.1 Accepted alive Link to Nucleotide Sequence:NM_026364.2Link to Protein Sequence:NP_080640.1Re-query CCDS DB by Nucleotide ID:NM_026364Re-query CCDS DB by Protein ID:NP_080640Link to BLAST:NP_080640.1

Chromosomal Locations for CCDS 48985.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116471397 116471555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116472177 116472323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116472944 116473014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116477202 116477347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116478060 116478115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116478525 116478640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116479652 116479824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116485869 116485935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116488118 116488170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116490048 116490217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGCCCAGGAAGCTGCTGCTGCTGCCCCCGCTGTCCGCGTGCTCTGCTCTGCGTGTCCCGCGGGCTCGGC
CCGCCGCCTCGCCGGCCATGAACGCAGCCCGCACCGGCTACCGAGTCTTCTCGGCCAACTCCACGGCCGC
CTGCACGGAACTGGCCAAGCGCATCACTGAGCGTCTTGGTGCTGAATTGGGGAAATCTGTTGTATATCAG
GAGACCAATGGAGAAACAAGAGTTGAAATCAAAGAATCTGTTCGTGGCCAAGATATTTTCATTATACAGA
CAATACCCAGAGATGTGAATACGGCTGTGATGGAGCTGCTGATCATGGCGTATGCACTGAAGACCGCCTG
CGCCAGGAATATCATTGGCGTCATCCCCTACTTCCCCTACAGCAAGCAAAGCAAGATGCGCAAGAGGGGC
TCCATTGTGTGCAAGCTCCTGGCATCCATGCTGGCGAAAGCTGGTTTAACTCACATTATCACTATGGACC
TCCACCAAAAGGAAATACAAGGCTTTTTCAGCTTTCCCGTGGACAACCTTAGAGCCTCACCTTTCCTGCT
TCAGTATATCCAGGAAGAAATTCCAAATTACAGAAATGCAGTCATTGTAGCTAAGTCTCCTGATGCTGCA
AAAAGGGCTCAGTCCTATGCTGAAAGGCTCCGCCTGGGGCTGGCTGTGATCCACGGAGAAGCGCAGTGTA
CAGAGCTGGATATGGACGACGGTCGGCACTCCCCACCCATGGTCAAGAACGCCACGGTGCACCCAGGCCT
GGAGCTGCCCTTAATGATGGCCAAAGAGAAGCCACCAATAACAGTGGTCGGAGACGTCGGGGGACGCATT
GCGATTATAGTGGATGACATCATTGATGACGTGGAGAGCTTTGTTGCTGCTGCAGAGATCCTGAAAGAGA
GAGGTGCTTACAAGATCTATGTCATGGCCACGCACGGCATCCTGTCTGCTGAAGCCCCCCGTCTGATTGA
GGAGTCCCCCATTGATGAGGTGGTGGTGACAAACACTGTCCCTCATGAACTTCAGAAACTACAGTGTCCC
AAGATAAAGACTGTGGACATCAGCCTGATTCTTTCTGAGGCGATTCGGAGAATCCACAATGGAGAGTCTA
TGGCTTACCTCTTCCGGAACATCACAGTGGATGACTAG

Translation (385 aa):
MPRKLLLLPPLSACSALRVPRARPAASPAMNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQ
ETNGETRVEIKESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRG
SIVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAA
KRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPPITVVGDVGGRI
AIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSAEAPRLIEESPIDEVVVTNTVPHELQKLQCP
KIKTVDISLILSEAIRRIHNGESMAYLFRNITVDD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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