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Report for CCDS39500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39500.1 Public Mus musculus 6 Tigd2 23 108 98 CCDS HistoryNCBI Gene:68140Re-query CCDS DB by CCDS ID:39500.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39500.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062626.3 ENSMUSP00000057223.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062626.3Link to Ensembl Protein Viewer:ENSMUSP00000057223.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000062626Re-query CCDS DB by Protein ID:ENSMUSP00000057223
Original member Current member NCBI NM_001081145.1 NP_001074614.1 Accepted alive Link to Nucleotide Sequence:NM_001081145.1Link to Protein Sequence:NP_001074614.1Re-query CCDS DB by Nucleotide ID:NM_001081145Re-query CCDS DB by Protein ID:NP_001074614Link to BLAST:NP_001074614.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074614.1 525 Q0VBL1 525 100% 0 0

Chromosomal Locations for CCDS 39500.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 59210150 59211727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGTTGGGGAAACGTAAACGTGTGGTCCTGACAATTAAAGACAAACTTGACATTATTAAGAAGCTTGAAG
AAGGCAACTCCTTCAAAAAACTTTCTGTCCTGTATGGAATTGGTGAATCCACAGTTCGTGACATTAAAAA
AAACAAAGAGAGAATTATAAACTATGCCAACAGTTCAGACCCAACTAGTGGGGTGTCCAAGCGTAAATCC
ATGAAGTCGTCAACGTATGAGGAGCTTGACAGAGTGATGATAGAATGGTTTAATCAACAGAAAACAGATG
GCATTCCAGTGTCTGGAACGATCTGTGCAAAGCAGGCTAGGTTCTTCTTCGATGCATTGGGCATGGAGGG
TGATTTTAATGCCTCTTCTGGCTGGCTTACTAGGTTTAAGCAGCGCCACGGTATTCCAAAGGCTGCAGGG
AAAGGCACAAAATTAAAAGGGGATGAAACTGCTGCCAGTGAATTTTGTGGTAACTTTCAGGAATTTGTGG
AAAGAGAAAATCTCCTACCAGAACAGATTTATGGTGCTGACCAAACTGGATTGTTCTGGAAATGTCTACC
AACGAGGACATTGGCTTTTGACACGGACCAGAGTACTTGTGAATATAGGACAAGCAGAGAAAGAATCATT
ATTATGTGTTGTGCAAATGCCACAGGTTCACACAAGCTTAATCTCTGTGTTGTGGGGAAAGCAAAAAGAC
CCCGTGCATTCAAAGGTACTGACCTTTCAAACCTCCCTGTCACTTACTTCAGTCAAAAAAGTGCATGGAT
CGAGCCATCTGTTCTCAAACAGTGGTTTGAAAAGTGCTTTGTGCCACAGGTGCAGAAGCATCTGAAATCC
AAAGGGCTTCGAGAAAAAGCAGTACTACTTTTGGATTTTCCTGCAGCACATCCAGCTGAAGAACTGCTGA
GCTCAGATGATGGCAGAATAATTGTGAAATATTTGCCACCAAACGTCACAAGTCTAATTCAACCTATGAG
CCAGGGAGTTCTAACCACAGTCAAAAGATATTACCGAGCAGGACTTATCCAGAAGTACATGGATGAAGGA
AATGACCCAAAAACATTTTGGAAGAATTTGACTGTGTTGGATGCAATTTATGAGGCATCAAGAGCCTGGA
ACCAGATAAGATCAAACACCATAACCAGAGCGTGGAAAAAACTTTTCCCTGGCAATGAGGAAAACCCGAG
TGTGAGCATCGATGAAGGAGCCATTTTAGCAGCTAATTTAGCAACGGTTTTGCAGAATACTGAAGACTGT
GAACATGTTAACATTGAAAATATTGAGCAGTGGTTTGACTCTCGGAGTAGTGGCTCAAACTGTCAGGTGT
TAGCTGACATTGTAGGTGCTGCAGACCGGGCGAAGGTCACTGAGCAAAAACCTTCTAGGAAAACTAGGAA
AGCAGAACTGAATCCAGAGAAGCATATTAGTCATAAAGCTGCACTTGAATGGACTGAAAACTTGCTGGAT
TATCTAGAACAACAAGATGACATGCTACTCTCTGATAAGCTGGTATTGCGGAGGCTTCGGACCATTATAA
GAAGAAAACAGAGAATACAAAATAAAAGTCATCTATAA

Translation (525 aa):
MLGKRKRVVLTIKDKLDIIKKLEEGNSFKKLSVLYGIGESTVRDIKKNKERIINYANSSDPTSGVSKRKS
MKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQARFFFDALGMEGDFNASSGWLTRFKQRHGIPKAAG
KGTKLKGDETAASEFCGNFQEFVERENLLPEQIYGADQTGLFWKCLPTRTLAFDTDQSTCEYRTSRERII
IMCCANATGSHKLNLCVVGKAKRPRAFKGTDLSNLPVTYFSQKSAWIEPSVLKQWFEKCFVPQVQKHLKS
KGLREKAVLLLDFPAAHPAEELLSSDDGRIIVKYLPPNVTSLIQPMSQGVLTTVKRYYRAGLIQKYMDEG
NDPKTFWKNLTVLDAIYEASRAWNQIRSNTITRAWKKLFPGNEENPSVSIDEGAILAANLATVLQNTEDC
EHVNIENIEQWFDSRSSGSNCQVLADIVGAADRAKVTEQKPSRKTRKAELNPEKHISHKAALEWTENLLD
YLEQQDDMLLSDKLVLRRLRTIIRRKQRIQNKSHL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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