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Report for CCDS22709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22709.1 Public Mus musculus 8 Dnaaf1 23 108 98 CCDS HistoryNCBI Gene:68270Re-query CCDS DB by CCDS ID:22709.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22709.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093100.2 ENSMUSP00000090790.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093100.2Link to Ensembl Protein Viewer:ENSMUSP00000090790.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000093100Re-query CCDS DB by Protein ID:ENSMUSP00000090790
Original member Current member NCBI NM_026648.4 NP_080924.1 Accepted alive Link to Nucleotide Sequence:NM_026648.4Link to Protein Sequence:NP_080924.1Re-query CCDS DB by Nucleotide ID:NM_026648Re-query CCDS DB by Protein ID:NP_080924Link to BLAST:NP_080924.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080924.1 634 Q9D2H9 634 100% 0 0

Chromosomal Locations for CCDS 22709.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 119575362 119575467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119577331 119577466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119579228 119579319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119582509 119582730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119582847 119583013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119588178 119588299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119590579 119590736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119591701 119591958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119594833 119594924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119595944 119596003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119596687 119597083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119597571 119597665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1905 nt):
ATGCACCCCGAAGTCTCTGAGCCGCCGGTGGACAGCGTGGCGGAGCCCAGTCTGGAGGAGTCGGCAGGCG
ATCACGGCGACGCGGGGCCAGGGATCCGTAAAGAAGAAATTAGTGAGACCAAGGAAACATGTGCGGGTCC
TTGCACAACATCCTGCCCAAGTCAGCAGCAACCAAGTGGCGACAACGGGTCAGAGGGCTTCTGCACCCAC
TCGAGAGATGACAGAGAGGATCGGGGCCCCAGGATGACGAAACAGTTCCTTCAAAAGCTCTGCAAGCAGC
ACAAGCTGTACGTCACCCCCGCCCTGAACGACACCCTGTATTTGCACTTTAAGGGCTTTGACCGCATTGA
GAACCTGGAGGAGTACACGGGCCTGCGCTGCCTCTGGCTGGAGTGCAATGGCATCCAGAGGATCGAGAAT
CTGCAGGCCCAGAGCGAACTGCGCTGCCTCTTCCTGCAAGTGAACCTGTTGCACAAGATCGAGAACCTGG
AGCCCCTCCAGAAGCTGGACGCCCTCAACCTGAGCAACAACTACATCAAGACCATTGAGAACCTCTCCTG
CCTCCCTGTCCTGAACACACTGCAAATGGCCCACAACCGCCTGGAGACGGTGGCTGACATTGAGCACCTC
AGGGAGTGTCTGCGACTCTGTGTCCTCGACCTCTCCCACAATGCGCTGAGTGACCCTGAGATCCTGAGCG
TGCTAGAGAGCATGCCCTGTCTGCGTGTGCTGAACCTCATGGGAAACCCAGTGACCAAACACATCCCTAA
CTACCGCAGGACGGTCACTGTCCGTCTGAAGCACTTGACTTATCTGGATGACAGGCCAGTTTTCCCCAAG
GACAGGGCGTGTGCAGAGGCATGGGCCCGAGGTGGGTATGCCGCCGAGAAGGAAGAGCGTCGCCAGTGGG
AGAGCAGGGAACACAAGAAGATAACAGACAGCCTGGAAGCCTTGGCCATGATCAAGCGTCGGGCTGAGGA
GCGGAAGAAGGCAAGAGATAGAGGGGAGACACCCCTGCCAGACAGCGAAGGGAGTATCCCCACCAGCCCG
GAGGCTGAGGAAAAGCAACCCATGGGGGAAATCCAGAAGAAGATGGAGTTGTTTGTGGAGGAGAGCTTTG
AAGCCAAAGATGAACTGTTTCCAGAGACGCCAGGAGGAGAAAAGGAGCTGCATGTGGTTGTGGTGAATGG
GGCAGTGGAGAATCCAGACCTGTCTGGGAGCCTGGCTCACAACCAGACACCTGTGGTGGTCACCCCGGAA
GAGTCTACATCTCCAGTGGCAGCTACTGATGGGGCCAGAACTGAAGATATAGAGGCCGTTGCCGTGGAGA
TCAAGGAGAGGCTTTTCATTGATGACCTTCCTGACTTGGAAGATGCTGAGGGTACAGATGTGTCTGTGGA
AGACCAGATAAAGGAGACAGACATCCCGAGAATCCAGGCCATTTCCAGCTTGAGTGACGACAGTGACCCG
GAGCTGGACGAGCTGTCCCTCTCCACGTCTGAGGCCACTCCCACAGGCGCCACAGGTGCCCTCTCACACA
TATTTGCCATCTCCAAGGGCCCCTCCACGGCAGCCACGGTGCCTTTCACAGACATATGTAAGCCAATAGC
AACAACGGACTTAGAAAGCCAAGGTCAAGACTGCGGTGCAGCGGCCTCACGCCCCCTCATCCAGGAGCTC
AATGATGAGCCGGCAGAGGAAGCAGCAAACCAGCCACTGCCGCCCCAAACCTGTGCGAGTGACCCTGCAC
TTGCCCACCCTAGTGAAGATGGAGACAGCGACAGCCAGCTGCCTGCAGCCACTCTGCTAGGAGATGGAGC
GGAGGATGAAGCAGAGTCTTCGGTGCACCCGAAGGAGCCCAGCACCCGGGTAGGCCTAGAAGATATTGAA
TTTGGCTTGGACTGA

Translation (634 aa):
MHPEVSEPPVDSVAEPSLEESAGDHGDAGPGIRKEEISETKETCAGPCTTSCPSQQQPSGDNGSEGFCTH
SRDDREDRGPRMTKQFLQKLCKQHKLYVTPALNDTLYLHFKGFDRIENLEEYTGLRCLWLECNGIQRIEN
LQAQSELRCLFLQVNLLHKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNRLETVADIEHL
RECLRLCVLDLSHNALSDPEILSVLESMPCLRVLNLMGNPVTKHIPNYRRTVTVRLKHLTYLDDRPVFPK
DRACAEAWARGGYAAEKEERRQWESREHKKITDSLEALAMIKRRAEERKKARDRGETPLPDSEGSIPTSP
EAEEKQPMGEIQKKMELFVEESFEAKDELFPETPGGEKELHVVVVNGAVENPDLSGSLAHNQTPVVVTPE
ESTSPVAATDGARTEDIEAVAVEIKERLFIDDLPDLEDAEGTDVSVEDQIKETDIPRIQAISSLSDDSDP
ELDELSLSTSEATPTGATGALSHIFAISKGPSTAATVPFTDICKPIATTDLESQGQDCGAAASRPLIQEL
NDEPAEEAANQPLPPQTCASDPALAHPSEDGDSDSQLPAATLLGDGAEDEAESSVHPKEPSTRVGLEDIE
FGLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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